Variant report

Variant	rs35098023
Chromosome Location	chr3:99592716-99592717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99591437..99593701-chr3:99599542..99601612,3	K562	blood:
2	chr3:99582314..99585905-chr3:99590964..99594499,4	MCF-7	breast:
3	chr3:99589147..99593753-chr3:99593896..99597054,6	MCF-7	breast:
4	chr3:99591850..99594536-chr3:99980465..99982700,2	K562	blood:
5	chr3:99592456..99594885-chr3:99685238..99688172,2	MCF-7	breast:
6	chr3:99557106..99559830-chr3:99591722..99593222,2	K562	blood:

Variant related genes	Relation type
ENSG00000168386	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13063594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076199	0.87[EUR][1000 genomes]
rs13082013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089461	0.87[EUR][1000 genomes]
rs13095282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096116	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13097830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100490	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34174004	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34571898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971126	0.82[AMR][1000 genomes]
rs35074168	1.00[AFR][1000 genomes]
rs35669249	1.00[AFR][1000 genomes]
rs36077012	0.87[EUR][1000 genomes]
rs62283494	1.00[AFR][1000 genomes]
rs62283538	0.82[EUR][1000 genomes]
rs6788894	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6791889	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7626245	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99537200-99594400	Weak transcription	Esophagus	oesophagus
2	chr3:99563200-99593600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:99573200-99594000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:99575000-99593600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:99581400-99594000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr3:99583600-99593600	Weak transcription	Primary B cells from cord blood	blood
7	chr3:99586200-99594000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:99587400-99592800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:99587400-99594600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:99589400-99593000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr3:99590000-99595800	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr3:99590200-99595800	Active TSS	Right Atrium	heart
13	chr3:99590200-99596000	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr3:99590400-99592800	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr3:99590600-99593600	Enhancers	Stomach Mucosa	stomach
16	chr3:99590600-99595800	Active TSS	Ovary	ovary
17	chr3:99590600-99596400	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr3:99590800-99594200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:99591000-99593000	Enhancers	HMEC	breast
20	chr3:99591000-99594000	Weak transcription	Liver	Liver
21	chr3:99591000-99594200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:99591200-99593400	Active TSS	Left Ventricle	heart
23	chr3:99591200-99594400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:99591200-99594400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:99591200-99594400	Weak transcription	Lung	lung
26	chr3:99591200-99594400	Weak transcription	Pancreas	Pancrea
27	chr3:99591200-99595600	Active TSS	Right Ventricle	heart
28	chr3:99591400-99593200	Flanking Active TSS	HUVEC	blood vessel
29	chr3:99591400-99596200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:99591600-99592800	Transcr. at gene 5' and 3'	HSMM	muscle
31	chr3:99591600-99593000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:99591600-99593000	Flanking Active TSS	Fetal Intestine Large	intestine
33	chr3:99591600-99593400	Flanking Active TSS	Osteobl	bone
34	chr3:99591600-99594200	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr3:99591600-99595600	Active TSS	Colonic Mucosa	Colon
36	chr3:99591600-99595600	Active TSS	Psoas Muscle	Psoas
37	chr3:99591600-99595600	Active TSS	HSMMtube	muscle
38	chr3:99591600-99596000	Active TSS	Stomach Smooth Muscle	stomach
39	chr3:99591600-99596000	Active TSS	NHLF	lung
40	chr3:99591600-99596400	Active TSS	Fetal Muscle Leg	muscle
41	chr3:99591600-99596800	Active TSS	Aorta	Aorta
42	chr3:99591800-99593400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:99591800-99594000	Flanking Active TSS	NHEK	skin
44	chr3:99591800-99594400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:99591800-99594400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:99591800-99594400	Weak transcription	Small Intestine	intestine
47	chr3:99592000-99592800	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr3:99592000-99593000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:99592000-99593200	Enhancers	K562	blood
50	chr3:99592000-99594000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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