Variant report

Variant	rs55975637
Chromosome Location	chr3:99419853-99419854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13060898	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13074107	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17778253	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34259523	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34265976	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35170022	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35492383	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35640679	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62281858	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62281859	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62283460	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62283463	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62283465	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62283470	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71313564	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99403600-99424800	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:99411400-99439600	Weak transcription	NHEK	skin
5	chr3:99411800-99426000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:99413000-99423400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:99413600-99422800	Weak transcription	HMEC	breast
8	chr3:99413800-99423800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:99415200-99421400	Strong transcription	HSMM	muscle
10	chr3:99417400-99421000	Genic enhancers	HUVEC	blood vessel
11	chr3:99417400-99422400	Genic enhancers	Osteobl	bone
12	chr3:99417600-99420000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:99417600-99422400	Enhancers	NHDF-Ad	bronchial
14	chr3:99417800-99420000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:99417800-99423800	Genic enhancers	Muscle Satellite Cultured Cells	--
16	chr3:99418000-99420800	Enhancers	NHLF	lung
17	chr3:99418200-99420000	Enhancers	Ovary	ovary
18	chr3:99418400-99420600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:99418600-99420200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:99418600-99420600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:99418800-99420000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:99418800-99420400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:99418800-99422400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:99419000-99428200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:99419200-99420000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:99419200-99420000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:99419200-99420000	Enhancers	Adipose Nuclei	Adipose
28	chr3:99419400-99420000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr3:99419600-99420000	Enhancers	Right Atrium	heart
30	chr3:99419600-99422600	Genic enhancers	NH-A	brain
31	chr3:99419800-99421800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:99419800-99423600	Weak transcription	Aorta	Aorta
33	chr3:99419800-99430400	Weak transcription	Left Ventricle	heart

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