Variant report

Variant	rs9859600
Chromosome Location	chr3:99387903-99387904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1112773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13059876	0.87[CEU][hapmap];0.94[GIH][hapmap];0.82[EUR][1000 genomes]
rs13066932	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs13067276	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs13079203	0.82[EUR][1000 genomes]
rs13081022	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs13082798	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs13089811	0.87[CEU][hapmap]
rs13095226	0.87[CEU][hapmap];0.94[GIH][hapmap];0.82[EUR][1000 genomes]
rs13100157	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs17777354	0.87[CEU][hapmap];0.94[GIH][hapmap];0.82[EUR][1000 genomes]
rs17778253	0.81[GIH][hapmap]
rs34400116	0.82[EUR][1000 genomes]
rs34578241	0.82[EUR][1000 genomes]
rs35340549	0.82[EUR][1000 genomes]
rs35637598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35766910	0.82[EUR][1000 genomes]
rs35952376	0.82[EUR][1000 genomes]
rs4107949	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4535264	0.86[CEU][hapmap]
rs4928140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4928215	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62281832	0.81[EUR][1000 genomes]
rs62281833	0.82[EUR][1000 genomes]
rs62281835	0.81[EUR][1000 genomes]
rs6774706	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs6779634	0.87[CEU][hapmap]
rs6797919	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6808963	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs71313561	0.82[EUR][1000 genomes]
rs71313563	0.81[EUR][1000 genomes]
rs9848257	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9883702	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99379200-99388600	Weak transcription	NH-A	brain
2	chr3:99382000-99390200	Genic enhancers	Muscle Satellite Cultured Cells	--
3	chr3:99383800-99389400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:99385200-99393200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:99385400-99388400	Weak transcription	NHEK	skin
7	chr3:99385400-99388600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:99385400-99388600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:99385400-99389800	Enhancers	NHLF	lung
10	chr3:99385400-99392600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:99385400-99392600	Weak transcription	HMEC	breast
12	chr3:99385400-99393000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:99386200-99388200	Enhancers	Osteobl	bone
14	chr3:99386200-99391000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:99386400-99389800	Enhancers	HUVEC	blood vessel
16	chr3:99386600-99392800	Weak transcription	HSMMtube	muscle
17	chr3:99386600-99393200	Weak transcription	Aorta	Aorta
18	chr3:99386800-99388600	Strong transcription	HSMM	muscle
19	chr3:99386800-99388800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:99386800-99389600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:99387400-99388200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:99387600-99389400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:99387800-99388000	Enhancers	NHDF-Ad	bronchial

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