Variant report

Variant	rs13082798
Chromosome Location	chr3:99393551-99393552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1112773	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13059876	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066932	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13067276	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079203	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13081022	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089811	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs13095226	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100157	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17777354	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34400116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34578241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35299440	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35340549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35637598	0.84[EUR][1000 genomes]
rs35766910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4107949	0.81[EUR][1000 genomes]
rs4535264	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4928140	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs4928215	0.82[EUR][1000 genomes]
rs62281832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62281835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6774706	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779634	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6797919	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs6808963	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71313563	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9848257	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs9859600	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs9883702	0.87[CEU][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99391800-99394000	Enhancers	NHEK	skin
3	chr3:99391800-99394400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:99391800-99396400	Genic enhancers	Osteobl	bone
5	chr3:99391800-99396600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:99392600-99393600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:99392600-99394600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:99392600-99395200	Genic enhancers	Muscle Satellite Cultured Cells	--
9	chr3:99392800-99394200	Enhancers	HSMMtube	muscle
10	chr3:99392800-99394200	Enhancers	NH-A	brain
11	chr3:99393000-99393600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:99393000-99393600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:99393000-99393600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:99393000-99393600	Enhancers	Psoas Muscle	Psoas
15	chr3:99393000-99393600	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:99393000-99393600	Genic enhancers	NHDF-Ad	bronchial
17	chr3:99393000-99393600	Enhancers	NHLF	lung
18	chr3:99393000-99394000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr3:99393000-99394000	Enhancers	Colon Smooth Muscle	Colon
20	chr3:99393000-99394000	Enhancers	Stomach Smooth Muscle	stomach
21	chr3:99393000-99394000	Genic enhancers	HSMM	muscle
22	chr3:99393000-99394400	Enhancers	Hela-S3	cervix
23	chr3:99393000-99395000	Strong transcription	HUVEC	blood vessel
24	chr3:99393200-99393600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr3:99393200-99393600	Enhancers	Aorta	Aorta
26	chr3:99393200-99393600	Flanking Active TSS	HMEC	breast
27	chr3:99393200-99394000	Enhancers	Stomach Mucosa	stomach
28	chr3:99393400-99394000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:99393400-99394000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:99393400-99394800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:99393400-99394800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr3:99393400-99396600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:99393400-99396800	Weak transcription	Left Ventricle	heart

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