Variant report

Variant	rs13079203
Chromosome Location	chr3:99388515-99388516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1112773	0.81[EUR][1000 genomes]
rs13059876	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13066932	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067276	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13081022	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13082798	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13089811	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs13095226	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13100157	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17777354	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34400116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34578241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35299440	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35340549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35637598	0.84[EUR][1000 genomes]
rs35766910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35952376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4107949	0.81[EUR][1000 genomes]
rs4535264	0.85[CEU][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4928140	0.82[EUR][1000 genomes]
rs4928215	0.82[EUR][1000 genomes]
rs62281832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62281833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62281835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6774706	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6779634	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs6797919	0.82[EUR][1000 genomes]
rs6808963	0.85[CEU][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71313561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313563	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9848257	0.82[EUR][1000 genomes]
rs9859600	0.82[EUR][1000 genomes]
rs9883702	0.84[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99379200-99388600	Weak transcription	NH-A	brain
2	chr3:99382000-99390200	Genic enhancers	Muscle Satellite Cultured Cells	--
3	chr3:99383800-99389400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:99385200-99393200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:99385400-99388600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:99385400-99388600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:99385400-99389800	Enhancers	NHLF	lung
9	chr3:99385400-99392600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:99385400-99392600	Weak transcription	HMEC	breast
11	chr3:99385400-99393000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:99386200-99391000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:99386400-99389800	Enhancers	HUVEC	blood vessel
14	chr3:99386600-99392800	Weak transcription	HSMMtube	muscle
15	chr3:99386600-99393200	Weak transcription	Aorta	Aorta
16	chr3:99386800-99388600	Strong transcription	HSMM	muscle
17	chr3:99386800-99388800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:99386800-99389600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:99387600-99389400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:99388000-99388800	Weak transcription	NHDF-Ad	bronchial
21	chr3:99388200-99389800	Genic enhancers	Osteobl	bone
22	chr3:99388200-99390000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:99388400-99389000	Enhancers	NHEK	skin

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