Variant report

Variant	rs4928215
Chromosome Location	chr3:99405841-99405842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99363894..99365328-chr3:99405551..99406620,7	MCF-7	breast:
2	chr3:99217843..99218709-chr3:99405590..99406505,5	MCF-7	breast:
3	chr3:99363982..99364505-chr3:99405611..99406129,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1112773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13059876	0.82[EUR][1000 genomes]
rs13066932	0.82[EUR][1000 genomes]
rs13067276	0.82[EUR][1000 genomes]
rs13079203	0.82[EUR][1000 genomes]
rs13081022	0.82[EUR][1000 genomes]
rs13082798	0.82[EUR][1000 genomes]
rs13095226	0.82[EUR][1000 genomes]
rs13100157	0.82[EUR][1000 genomes]
rs17777354	0.82[EUR][1000 genomes]
rs34400116	0.82[EUR][1000 genomes]
rs34578241	0.82[EUR][1000 genomes]
rs35299440	0.82[EUR][1000 genomes]
rs35340549	0.82[EUR][1000 genomes]
rs35637598	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35766910	0.82[EUR][1000 genomes]
rs35952376	0.82[EUR][1000 genomes]
rs4107949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535264	0.80[EUR][1000 genomes]
rs4928140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281832	0.81[EUR][1000 genomes]
rs62281833	0.82[EUR][1000 genomes]
rs62281835	0.81[EUR][1000 genomes]
rs6774706	0.82[EUR][1000 genomes]
rs6797919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808963	0.84[EUR][1000 genomes]
rs71313561	0.82[EUR][1000 genomes]
rs71313563	0.84[EUR][1000 genomes]
rs9848257	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9859600	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9883702	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99397200-99409600	Weak transcription	NHEK	skin
3	chr3:99397200-99411000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:99397400-99408200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:99397600-99406000	Weak transcription	NH-A	brain
6	chr3:99397600-99419200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:99397800-99418000	Weak transcription	NHLF	lung
9	chr3:99400800-99406200	Weak transcription	NHDF-Ad	bronchial
10	chr3:99400800-99407600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:99402200-99410200	Genic enhancers	Muscle Satellite Cultured Cells	--
12	chr3:99403000-99408800	Weak transcription	HSMMtube	muscle
13	chr3:99403200-99407200	Strong transcription	HUVEC	blood vessel
14	chr3:99403600-99424800	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:99403800-99418200	Weak transcription	Ovary	ovary
16	chr3:99404200-99406800	Strong transcription	HSMM	muscle
17	chr3:99404200-99407600	Strong transcription	Osteobl	bone
18	chr3:99404200-99408800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:99404200-99413400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:99404800-99406200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:99405000-99408000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:99405200-99410000	Weak transcription	Psoas Muscle	Psoas
23	chr3:99405600-99406400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:99405800-99409800	Weak transcription	Aorta	Aorta

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