Variant report

Variant	rs35766910
Chromosome Location	chr3:99397254-99397255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL8A1-3	chr3:99396595-99399306	NONHSAT090847

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1112773	0.81[EUR][1000 genomes]
rs13059876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13067276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13081022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089811	0.83[AMR][1000 genomes]
rs13095226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17777354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34400116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34578241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35299440	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35340549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35637598	0.84[EUR][1000 genomes]
rs35952376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4107949	0.81[EUR][1000 genomes]
rs4535264	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4928140	0.82[EUR][1000 genomes]
rs4928215	0.82[EUR][1000 genomes]
rs62281832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62281835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6774706	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779634	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6797919	0.82[EUR][1000 genomes]
rs6808963	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71313563	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9848257	0.82[EUR][1000 genomes]
rs9859600	0.82[EUR][1000 genomes]
rs9883702	0.84[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:99394800-99397400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:99395800-99398600	Strong transcription	HUVEC	blood vessel
5	chr3:99396200-99397400	Genic enhancers	HSMM	muscle
6	chr3:99396200-99398600	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:99396400-99397400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:99396400-99397400	Transcr. at gene 5' and 3'	Osteobl	bone
9	chr3:99396400-99397600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:99396400-99397600	Enhancers	HMEC	breast
11	chr3:99396400-99397600	Enhancers	NH-A	brain
12	chr3:99396400-99397800	Enhancers	NHLF	lung
13	chr3:99396400-99398000	Enhancers	Adipose Nuclei	Adipose
14	chr3:99396400-99398200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:99396400-99398200	Enhancers	NHDF-Ad	bronchial
16	chr3:99396400-99398600	Enhancers	Colon Smooth Muscle	Colon
17	chr3:99396600-99397400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:99396600-99397400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:99396600-99397400	Genic enhancers	Aorta	Aorta
20	chr3:99396600-99397400	Flanking Active TSS	HSMMtube	muscle
21	chr3:99396600-99397600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:99396600-99397600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:99396600-99398000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:99396800-99397400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:99396800-99397400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:99396800-99397400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:99396800-99397400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:99396800-99397400	Enhancers	Ovary	ovary
29	chr3:99396800-99397400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr3:99396800-99397600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:99396800-99397600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:99397000-99397400	Enhancers	Fetal Stomach	stomach
33	chr3:99397000-99402800	Weak transcription	Left Ventricle	heart
34	chr3:99397200-99397600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:99397200-99397600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
36	chr3:99397200-99409600	Weak transcription	NHEK	skin
37	chr3:99397200-99411000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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