Variant report

Variant	rs13089811
Chromosome Location	chr3:99395906-99395907
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1112773	0.87[CEU][hapmap]
rs13059876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs13066932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs13067276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs13079203	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs13081022	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs13082798	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs13095226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs13100157	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs17777354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs34400116	0.83[AMR][1000 genomes]
rs34578241	0.83[AMR][1000 genomes]
rs35340549	0.83[AMR][1000 genomes]
rs35766910	0.83[AMR][1000 genomes]
rs35952376	0.83[AMR][1000 genomes]
rs4535264	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4928140	0.87[CEU][hapmap]
rs62281832	0.83[AMR][1000 genomes]
rs62281833	0.83[AMR][1000 genomes]
rs62281835	0.83[AMR][1000 genomes]
rs6774706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs6779634	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6797919	0.87[CEU][hapmap]
rs6808963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs71313561	0.83[AMR][1000 genomes]
rs9848257	0.87[CEU][hapmap]
rs9859600	0.87[CEU][hapmap]
rs9883702	0.87[CEU][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99391800-99396400	Genic enhancers	Osteobl	bone
3	chr3:99391800-99396600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:99393400-99396600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:99393400-99396800	Weak transcription	Left Ventricle	heart
6	chr3:99393600-99396200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:99393600-99396400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:99393600-99396400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:99393600-99396400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:99393600-99396400	Weak transcription	NHDF-Ad	bronchial
11	chr3:99393600-99396400	Weak transcription	NHLF	lung
12	chr3:99393600-99396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:99393600-99396600	Weak transcription	Aorta	Aorta
14	chr3:99393600-99396800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:99393600-99396800	Weak transcription	Psoas Muscle	Psoas
16	chr3:99394000-99396200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:99394000-99396200	Strong transcription	HSMM	muscle
18	chr3:99394000-99396200	Weak transcription	NHEK	skin
19	chr3:99394000-99396400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:99394000-99396400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:99394000-99396400	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:99394200-99396200	Weak transcription	HSMMtube	muscle
24	chr3:99394200-99396400	Weak transcription	NH-A	brain
25	chr3:99394600-99396400	Weak transcription	HMEC	breast
26	chr3:99394600-99396600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:99394800-99396000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:99394800-99396800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr3:99394800-99397400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:99395200-99396000	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr3:99395800-99398600	Strong transcription	HUVEC	blood vessel

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