Variant report

Variant	rs6779634
Chromosome Location	chr3:99418544-99418545
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1112773	0.87[CEU][hapmap]
rs13059876	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13066932	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs13067276	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13079203	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs13081022	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13082798	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13089811	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13095226	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13100157	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17777354	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34400116	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34578241	0.93[EUR][1000 genomes]
rs35299440	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35340549	0.93[EUR][1000 genomes]
rs35766910	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35952376	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4535264	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928140	0.87[CEU][hapmap]
rs62281832	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62281833	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281835	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6774706	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6797919	0.87[CEU][hapmap]
rs6808963	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71313561	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71313563	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9848257	0.87[CEU][hapmap]
rs9859600	0.87[CEU][hapmap]
rs9883702	0.87[CEU][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99397600-99419200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:99403600-99424800	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:99407000-99419200	Weak transcription	Adipose Nuclei	Adipose
6	chr3:99407600-99418800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:99409200-99418800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:99411400-99439600	Weak transcription	NHEK	skin
9	chr3:99411800-99426000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:99413000-99423400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:99413600-99422800	Weak transcription	HMEC	breast
12	chr3:99413800-99423800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:99414400-99418600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:99415200-99421400	Strong transcription	HSMM	muscle
15	chr3:99415600-99418800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:99415600-99419200	Weak transcription	Aorta	Aorta
17	chr3:99417400-99421000	Genic enhancers	HUVEC	blood vessel
18	chr3:99417400-99422400	Genic enhancers	Osteobl	bone
19	chr3:99417600-99420000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:99417600-99422400	Enhancers	NHDF-Ad	bronchial
21	chr3:99417800-99420000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:99417800-99423800	Genic enhancers	Muscle Satellite Cultured Cells	--
23	chr3:99418000-99420800	Enhancers	NHLF	lung
24	chr3:99418200-99419200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:99418200-99419400	Flanking Active TSS	NH-A	brain
26	chr3:99418200-99420000	Enhancers	Ovary	ovary
27	chr3:99418400-99418600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:99418400-99420600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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