Variant report

Variant	rs6774706
Chromosome Location	chr3:99380389-99380390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1112773	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13059876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13067276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079203	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13081022	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082798	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs13095226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100157	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17777354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34400116	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34578241	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35299440	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35340549	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35637598	0.84[EUR][1000 genomes]
rs35766910	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952376	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4107949	0.81[EUR][1000 genomes]
rs4535264	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4928140	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs4928215	0.82[EUR][1000 genomes]
rs62281832	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281833	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62281835	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6779634	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6797919	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs6808963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313561	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71313563	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9848257	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs9859600	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs9883702	0.87[CEU][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99373200-99385000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:99373800-99385200	Genic enhancers	Osteobl	bone
3	chr3:99376000-99381400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:99376000-99381800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:99376200-99381400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:99377200-99382800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:99377800-99383400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:99378000-99382400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:99378200-99380800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:99378200-99381600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:99378200-99381600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:99378200-99383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:99378200-99383800	Weak transcription	Right Atrium	heart
14	chr3:99378800-99382600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:99378800-99382800	Weak transcription	HSMM	muscle
16	chr3:99378800-99383400	Weak transcription	Aorta	Aorta
17	chr3:99379000-99384800	Weak transcription	NHLF	lung
18	chr3:99379200-99382600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:99379200-99385000	Weak transcription	NHEK	skin
20	chr3:99379200-99388600	Weak transcription	NH-A	brain
21	chr3:99379400-99381200	Weak transcription	NHDF-Ad	bronchial
22	chr3:99379400-99381400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:99379400-99383600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:99379400-99383800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr3:99379400-99384800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:99379400-99385200	Weak transcription	Adipose Nuclei	Adipose
27	chr3:99379400-99385800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:99379600-99381000	Enhancers	HUVEC	blood vessel
29	chr3:99379600-99384000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:99379600-99384800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:99380000-99381400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:99380200-99381600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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