Variant report

Variant	rs13059876
Chromosome Location	chr3:99398156-99398157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL8A1-3	chr3:99396595-99399306	NONHSAT090847

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1112773	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13066932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13067276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079203	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13081022	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081855	0.82[TSI][hapmap]
rs13082798	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs13095226	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100157	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17777354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17778253	0.86[GIH][hapmap];0.83[TSI][hapmap]
rs34400116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34578241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35299440	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35340549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35637598	0.84[EUR][1000 genomes]
rs35766910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4107949	0.81[EUR][1000 genomes]
rs4535264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4928140	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs4928215	0.82[EUR][1000 genomes]
rs62281832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62281835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6774706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779634	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6797919	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[EUR][1000 genomes]
rs6808963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71313563	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7636514	0.82[TSI][hapmap]
rs9848257	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs9859600	0.87[CEU][hapmap];0.94[GIH][hapmap];0.82[EUR][1000 genomes]
rs9883702	0.87[CEU][hapmap];0.94[GIH][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:99395800-99398600	Strong transcription	HUVEC	blood vessel
4	chr3:99396200-99398600	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:99396400-99398200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:99396400-99398200	Enhancers	NHDF-Ad	bronchial
7	chr3:99396400-99398600	Enhancers	Colon Smooth Muscle	Colon
8	chr3:99397000-99402800	Weak transcription	Left Ventricle	heart
9	chr3:99397200-99409600	Weak transcription	NHEK	skin
10	chr3:99397200-99411000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:99397400-99398600	Strong transcription	HSMM	muscle
12	chr3:99397400-99402400	Weak transcription	Aorta	Aorta
13	chr3:99397400-99402800	Weak transcription	Ovary	ovary
14	chr3:99397400-99408200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:99397600-99398200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:99397600-99398400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:99397600-99398600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:99397600-99398600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:99397600-99398800	Genic enhancers	Muscle Satellite Cultured Cells	--
20	chr3:99397600-99406000	Weak transcription	NH-A	brain
21	chr3:99397600-99419200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:99397800-99418000	Weak transcription	NHLF	lung
24	chr3:99398000-99398800	Strong transcription	Osteobl	bone
25	chr3:99398000-99402600	Weak transcription	HSMMtube	muscle

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