Variant report

Variant	rs1112773
Chromosome Location	chr3:99409500-99409501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13059876	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13066932	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13067276	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13079203	0.81[EUR][1000 genomes]
rs13081022	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13082798	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13089811	0.87[CEU][hapmap]
rs13095226	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13100157	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs17777354	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs34400116	0.81[EUR][1000 genomes]
rs34578241	0.81[EUR][1000 genomes]
rs35299440	0.84[EUR][1000 genomes]
rs35340549	0.81[EUR][1000 genomes]
rs35637598	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35766910	0.81[EUR][1000 genomes]
rs35952376	0.81[EUR][1000 genomes]
rs4107949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535264	0.87[CEU][hapmap]
rs4928140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281832	0.80[EUR][1000 genomes]
rs62281833	0.81[EUR][1000 genomes]
rs62281835	0.80[EUR][1000 genomes]
rs6774706	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs6779634	0.87[CEU][hapmap]
rs6797919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808963	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs71313561	0.81[EUR][1000 genomes]
rs71313563	0.83[EUR][1000 genomes]
rs9848257	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9859600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9883702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99397200-99409600	Weak transcription	NHEK	skin
3	chr3:99397200-99411000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:99397600-99419200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:99397800-99418000	Weak transcription	NHLF	lung
7	chr3:99402200-99410200	Genic enhancers	Muscle Satellite Cultured Cells	--
8	chr3:99403600-99424800	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:99403800-99418200	Weak transcription	Ovary	ovary
10	chr3:99404200-99413400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:99405200-99410000	Weak transcription	Psoas Muscle	Psoas
12	chr3:99405800-99409800	Weak transcription	Aorta	Aorta
13	chr3:99406400-99411600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:99407000-99419200	Weak transcription	Adipose Nuclei	Adipose
15	chr3:99407200-99409800	Genic enhancers	HUVEC	blood vessel
16	chr3:99407600-99418800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:99408000-99410200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:99408200-99410200	Enhancers	NHDF-Ad	bronchial
19	chr3:99408200-99413000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:99408400-99409600	Weak transcription	NH-A	brain
21	chr3:99408800-99409800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:99408800-99409800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:99408800-99412800	Strong transcription	Osteobl	bone
24	chr3:99408800-99413400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:99409200-99413000	Strong transcription	HSMM	muscle
26	chr3:99409200-99418800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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