Variant report

Variant	rs17777354
Chromosome Location	chr3:99377220-99377221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99372823..99375416-chr3:99376039..99377991,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1112773	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs13059876	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13067276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079203	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13081022	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081855	0.82[TSI][hapmap]
rs13082798	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs13095226	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100157	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17778253	0.86[GIH][hapmap];0.83[TSI][hapmap]
rs34400116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34578241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35299440	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35340549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35637598	0.84[EUR][1000 genomes]
rs35766910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4107949	0.81[EUR][1000 genomes]
rs4535264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4928140	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs4928215	0.82[EUR][1000 genomes]
rs62281832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62281835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6774706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779634	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6797919	0.87[CEU][hapmap];0.87[GIH][hapmap];0.82[EUR][1000 genomes]
rs6808963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71313563	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7636514	0.82[TSI][hapmap]
rs9848257	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs9859600	0.87[CEU][hapmap];0.94[GIH][hapmap];0.82[EUR][1000 genomes]
rs9883702	0.87[CEU][hapmap];0.94[GIH][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99370600-99378000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:99370800-99377600	Weak transcription	HMEC	breast
3	chr3:99371600-99377400	Weak transcription	HSMMtube	muscle
4	chr3:99372200-99377400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:99372400-99377600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:99372600-99379200	Weak transcription	Lung	lung
7	chr3:99373200-99385000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:99373400-99377400	Weak transcription	NHEK	skin
9	chr3:99373800-99379400	Enhancers	NHDF-Ad	bronchial
10	chr3:99373800-99385200	Genic enhancers	Osteobl	bone
11	chr3:99374000-99379600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:99374200-99379200	Genic enhancers	Muscle Satellite Cultured Cells	--
13	chr3:99374400-99377600	Weak transcription	Adipose Nuclei	Adipose
14	chr3:99374400-99377800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:99374400-99380200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:99375000-99379400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:99375200-99378600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:99375800-99378000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:99376000-99381400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:99376000-99381800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:99376200-99381400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:99376600-99378600	Enhancers	HUVEC	blood vessel
23	chr3:99377000-99378200	Enhancers	Colon Smooth Muscle	Colon
24	chr3:99377000-99378200	Enhancers	Right Atrium	heart
25	chr3:99377000-99378400	Genic enhancers	Aorta	Aorta
26	chr3:99377000-99379000	Enhancers	NHLF	lung
27	chr3:99377200-99377400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:99377200-99377400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:99377200-99377400	Enhancers	Esophagus	oesophagus
30	chr3:99377200-99377600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:99377200-99377600	Flanking Active TSS	NH-A	brain
32	chr3:99377200-99378000	Enhancers	Stomach Smooth Muscle	stomach
33	chr3:99377200-99378000	Genic enhancers	HSMM	muscle
34	chr3:99377200-99378200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:99377200-99378200	Enhancers	Left Ventricle	heart
36	chr3:99377200-99378800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:99377200-99379600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:99377200-99382800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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