Variant report

Variant	rs7614366
Chromosome Location	chr3:99496351-99496352
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10935921	0.80[EUR][1000 genomes]
rs12107242	0.82[YRI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12485299	0.88[JPT][hapmap]
rs12486703	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12486901	0.80[CHD][hapmap];0.88[JPT][hapmap]
rs12494720	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13080329	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs13088056	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13088851	0.84[EUR][1000 genomes]
rs13099452	0.82[EUR][1000 genomes]
rs1492343	0.80[CHD][hapmap];0.88[JPT][hapmap]
rs1871847	0.80[CHD][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap]
rs1971381	0.85[ASW][hapmap];0.84[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[ASN][1000 genomes]
rs28820982	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34218799	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34303842	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34906671	0.84[EUR][1000 genomes]
rs35495890	0.84[EUR][1000 genomes]
rs35577846	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3921767	0.88[JPT][hapmap]
rs4408901	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4928143	0.86[JPT][hapmap]
rs4928144	0.92[ASW][hapmap];0.92[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4928219	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4928220	0.80[CHD][hapmap];0.88[JPT][hapmap]
rs4928222	0.80[CHD][hapmap];0.88[JPT][hapmap]
rs55648906	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6440807	0.84[CEU][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6792339	0.80[CHD][hapmap];0.88[JPT][hapmap]
rs6800456	0.88[JPT][hapmap]
rs73152013	0.84[EUR][1000 genomes]
rs7613580	0.85[EUR][1000 genomes]
rs7632327	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7632345	0.80[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508231	chr3:99442020-99498951	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99484400-99500400	Weak transcription	HSMMtube	muscle
2	chr3:99492000-99517600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:99493000-99496800	Enhancers	NHDF-Ad	bronchial
4	chr3:99493000-99497800	Genic enhancers	HSMM	muscle
5	chr3:99493200-99499400	Genic enhancers	Osteobl	bone
6	chr3:99494000-99499200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:99494200-99500400	Weak transcription	HMEC	breast
8	chr3:99494200-99513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:99494400-99498400	Weak transcription	Aorta	Aorta
10	chr3:99494600-99500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:99494800-99496400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:99494800-99496400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:99495000-99496600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:99495000-99497200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:99495200-99496400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:99495200-99496400	Enhancers	NH-A	brain
17	chr3:99495400-99496800	Enhancers	Fetal Stomach	stomach
18	chr3:99495600-99496400	Enhancers	K562	blood
19	chr3:99495800-99496400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:99495800-99496600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:99495800-99496800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:99495800-99502000	Weak transcription	HUVEC	blood vessel
23	chr3:99496000-99496400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:99496000-99496400	Enhancers	Placenta	Placenta
25	chr3:99496000-99498800	Weak transcription	NHLF	lung
26	chr3:99496000-99499200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:99496000-99499200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:99496000-99513000	Weak transcription	NHEK	skin

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