Variant report

Variant	rs12488237
Chromosome Location	chr3:56114861-56114862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1078309	1.00[CEU][hapmap]
rs1078310	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs12485705	1.00[AFR][1000 genomes]
rs12492055	1.00[AFR][1000 genomes]
rs1352008	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1485675	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs17056416	1.00[ASN][1000 genomes]
rs17732598	1.00[AFR][1000 genomes]
rs1878928	1.00[ASN][1000 genomes]
rs35431468	1.00[AFR][1000 genomes]
rs4974173	0.88[CEU][hapmap]
rs6764295	0.88[CEU][hapmap]
rs755321	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs9823863	0.82[CHB][hapmap];0.93[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56113600-56115000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56113600-56115000	Weak transcription	Aorta	Aorta
3	chr3:56113800-56115000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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