Variant report

Variant	rs1352008
Chromosome Location	chr3:56142860-56142861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1078309	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1078310	1.00[CEU][hapmap];0.85[GIH][hapmap];0.86[EUR][1000 genomes]
rs11926826	0.86[EUR][1000 genomes]
rs12485705	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12486948	0.86[EUR][1000 genomes]
rs12487839	0.83[EUR][1000 genomes]
rs12488237	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12490280	0.86[EUR][1000 genomes]
rs12491217	0.86[EUR][1000 genomes]
rs12492055	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12492253	0.86[EUR][1000 genomes]
rs12493083	0.90[ASN][1000 genomes]
rs1352012	0.83[EUR][1000 genomes]
rs1376984	0.83[CHB][hapmap]
rs17056646	0.86[EUR][1000 genomes]
rs17732598	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2316481	0.83[EUR][1000 genomes]
rs2316482	0.83[EUR][1000 genomes]
rs35431468	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4974120	0.86[EUR][1000 genomes]
rs4974121	0.86[EUR][1000 genomes]
rs4974123	0.86[EUR][1000 genomes]
rs4974168	0.90[ASN][1000 genomes]
rs4974170	0.89[EUR][1000 genomes]
rs4974171	0.89[EUR][1000 genomes]
rs4974173	0.88[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs4974176	0.86[EUR][1000 genomes]
rs4974179	0.86[EUR][1000 genomes]
rs4974180	0.86[EUR][1000 genomes]
rs55849756	0.86[EUR][1000 genomes]
rs59079055	0.86[EUR][1000 genomes]
rs59586765	0.90[ASN][1000 genomes]
rs60383545	0.86[EUR][1000 genomes]
rs60384923	0.86[EUR][1000 genomes]
rs61689518	0.83[EUR][1000 genomes]
rs62255403	0.90[ASN][1000 genomes]
rs6445770	0.89[CHB][hapmap]
rs6763791	0.83[EUR][1000 genomes]
rs6764295	0.88[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs6780051	0.83[EUR][1000 genomes]
rs6782034	0.86[EUR][1000 genomes]
rs6783356	0.86[EUR][1000 genomes]
rs6786058	0.86[EUR][1000 genomes]
rs6787104	0.83[CHB][hapmap]
rs6788949	0.83[EUR][1000 genomes]
rs6801342	0.83[EUR][1000 genomes]
rs6803165	0.86[EUR][1000 genomes]
rs6804221	0.86[EUR][1000 genomes]
rs6810099	0.83[EUR][1000 genomes]
rs724929	0.92[MEX][hapmap]
rs72870171	0.83[EUR][1000 genomes]
rs72870196	0.83[EUR][1000 genomes]
rs73834604	0.86[EUR][1000 genomes]
rs755321	1.00[CEU][hapmap];0.85[GIH][hapmap];0.86[EUR][1000 genomes]
rs7613726	0.86[EUR][1000 genomes]
rs7650293	0.86[EUR][1000 genomes]
rs7651042	0.85[ASN][1000 genomes]
rs977313	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56136600-56144800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:56137200-56144800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:56138400-56145000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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