Variant report

Variant	rs6764295
Chromosome Location	chr3:56207634-56207635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1078309	0.85[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1078310	0.88[CEU][hapmap];0.82[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11926826	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12485705	0.84[EUR][1000 genomes]
rs12486948	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12487839	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490280	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12491217	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12492055	0.97[EUR][1000 genomes]
rs12492253	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12635356	0.97[ASN][1000 genomes]
rs1352008	0.83[EUR][1000 genomes]
rs1352012	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1376984	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs1452214	0.95[ASN][1000 genomes]
rs1564907	0.85[ASN][1000 genomes]
rs1586314	0.94[ASN][1000 genomes]
rs1601451	0.94[ASN][1000 genomes]
rs17056646	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17288728	0.86[EUR][1000 genomes]
rs17732598	0.97[EUR][1000 genomes]
rs1825560	0.94[ASN][1000 genomes]
rs2167617	0.88[EUR][1000 genomes]
rs2316477	0.91[ASN][1000 genomes]
rs2316478	0.91[ASN][1000 genomes]
rs2316480	0.95[ASN][1000 genomes]
rs2316481	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2316482	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35431468	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35995295	0.83[EUR][1000 genomes]
rs4974120	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974121	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974123	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974130	0.88[EUR][1000 genomes]
rs4974170	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974171	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4974173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974175	0.90[JPT][hapmap]
rs4974176	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974179	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974180	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974196	0.83[EUR][1000 genomes]
rs55849756	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56004380	0.88[EUR][1000 genomes]
rs58413645	0.88[EUR][1000 genomes]
rs59079055	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60383545	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60384923	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61689518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6445768	0.97[ASN][1000 genomes]
rs6445770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6763791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6780051	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6782034	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6783356	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6786058	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6787104	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6788949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789409	0.88[EUR][1000 genomes]
rs6801342	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6803165	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804221	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6810099	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71309946	0.86[EUR][1000 genomes]
rs724929	0.82[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.82[ASN][1000 genomes]
rs72870171	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870196	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73834604	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs755321	0.88[CEU][hapmap];0.82[CHD][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7613726	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7636352	0.95[ASN][1000 genomes]
rs7644153	0.94[ASN][1000 genomes]
rs7644257	0.95[ASN][1000 genomes]
rs7650293	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs965961	0.96[ASN][1000 genomes]
rs977313	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9877547	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56207200-56208000	Active TSS	Brain Anterior Caudate	brain
2	chr3:56207200-56208000	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr3:56207400-56207800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:56207400-56207800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:56207400-56207800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
6	chr3:56207400-56208000	Active TSS	Brain Angular Gyrus	brain
7	chr3:56207400-56208000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:56207400-56208200	Enhancers	Fetal Brain Female	brain
9	chr3:56207600-56208000	Enhancers	Fetal Brain Male	brain

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