Variant report

Variant	rs6789409
Chromosome Location	chr3:56303321-56303322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1078309	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs1078310	0.87[CEU][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11926826	0.91[EUR][1000 genomes]
rs12486948	0.91[EUR][1000 genomes]
rs12487839	0.88[EUR][1000 genomes]
rs12490280	0.91[EUR][1000 genomes]
rs12491217	0.91[EUR][1000 genomes]
rs12492055	0.91[EUR][1000 genomes]
rs12492253	0.91[EUR][1000 genomes]
rs12494857	0.88[EUR][1000 genomes]
rs12496048	0.87[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs1352012	0.88[EUR][1000 genomes]
rs17056646	0.91[EUR][1000 genomes]
rs17288728	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17732598	0.91[EUR][1000 genomes]
rs2167617	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2316481	0.88[EUR][1000 genomes]
rs2316482	0.88[EUR][1000 genomes]
rs35431468	0.91[EUR][1000 genomes]
rs35995295	0.94[EUR][1000 genomes]
rs4974120	0.91[EUR][1000 genomes]
rs4974121	0.91[EUR][1000 genomes]
rs4974123	0.91[EUR][1000 genomes]
rs4974130	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974170	0.88[EUR][1000 genomes]
rs4974171	0.88[EUR][1000 genomes]
rs4974173	0.88[EUR][1000 genomes]
rs4974176	0.91[EUR][1000 genomes]
rs4974179	0.91[EUR][1000 genomes]
rs4974180	0.91[EUR][1000 genomes]
rs4974196	0.94[EUR][1000 genomes]
rs55849756	0.91[EUR][1000 genomes]
rs56004380	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58413645	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59079055	0.91[EUR][1000 genomes]
rs60383545	0.91[EUR][1000 genomes]
rs60384923	0.91[EUR][1000 genomes]
rs61689518	0.88[EUR][1000 genomes]
rs6763791	0.88[EUR][1000 genomes]
rs6764295	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs6780051	0.88[EUR][1000 genomes]
rs6782034	0.91[EUR][1000 genomes]
rs6783356	0.91[EUR][1000 genomes]
rs6786058	0.91[EUR][1000 genomes]
rs6788949	0.88[EUR][1000 genomes]
rs6801342	0.88[EUR][1000 genomes]
rs6803165	0.91[EUR][1000 genomes]
rs6804221	0.91[EUR][1000 genomes]
rs6810099	0.88[EUR][1000 genomes]
rs71309946	0.97[EUR][1000 genomes]
rs72870171	0.88[EUR][1000 genomes]
rs72870196	0.88[EUR][1000 genomes]
rs73834604	0.91[EUR][1000 genomes]
rs755321	0.87[CEU][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7613726	0.91[EUR][1000 genomes]
rs7650293	0.91[EUR][1000 genomes]
rs977313	0.91[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56288800-56311400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:56301800-56303600	Weak transcription	Fetal Brain Male	brain
3	chr3:56302400-56303400	Weak transcription	Fetal Kidney	kidney
4	chr3:56302800-56304600	Enhancers	Ovary	ovary
5	chr3:56303200-56304200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:56303200-56304600	Enhancers	Fetal Stomach	stomach

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