Variant report

Variant	rs72870171
Chromosome Location	chr3:56205166-56205167
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1078309	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1078310	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11926826	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12485705	0.84[EUR][1000 genomes]
rs12486948	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12487839	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490280	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12491217	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12492055	0.97[EUR][1000 genomes]
rs12492253	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12635356	0.97[ASN][1000 genomes]
rs1352008	0.83[EUR][1000 genomes]
rs1352012	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1376984	0.97[ASN][1000 genomes]
rs1452214	0.95[ASN][1000 genomes]
rs1564907	0.85[ASN][1000 genomes]
rs1586314	0.94[ASN][1000 genomes]
rs1601451	0.94[ASN][1000 genomes]
rs17056646	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17288728	0.86[EUR][1000 genomes]
rs17732598	0.97[EUR][1000 genomes]
rs1825560	0.94[ASN][1000 genomes]
rs2167617	0.88[EUR][1000 genomes]
rs2316477	0.91[ASN][1000 genomes]
rs2316478	0.91[ASN][1000 genomes]
rs2316480	0.95[ASN][1000 genomes]
rs2316481	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2316482	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35431468	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35995295	0.83[EUR][1000 genomes]
rs4974120	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974121	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974123	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974130	0.88[EUR][1000 genomes]
rs4974170	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974171	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4974173	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974176	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974179	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974180	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974196	0.83[EUR][1000 genomes]
rs55849756	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56004380	0.88[EUR][1000 genomes]
rs58413645	0.88[EUR][1000 genomes]
rs59079055	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60383545	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60384923	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61689518	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6445768	0.97[ASN][1000 genomes]
rs6445770	0.97[ASN][1000 genomes]
rs6763791	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6764295	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780051	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6782034	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6783356	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6786058	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6787104	1.00[ASN][1000 genomes]
rs6788949	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789409	0.88[EUR][1000 genomes]
rs6801342	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6803165	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804221	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6810099	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71309946	0.86[EUR][1000 genomes]
rs724929	0.82[ASN][1000 genomes]
rs72870196	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73834604	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs755321	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7613726	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7636352	0.95[ASN][1000 genomes]
rs7644153	0.94[ASN][1000 genomes]
rs7644257	0.95[ASN][1000 genomes]
rs7650293	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs965961	0.96[ASN][1000 genomes]
rs977313	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9877547	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522496	chr3:56197528-56206591	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56204400-56205800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:56204400-56206200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56204400-56207200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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