Variant report

Variant	rs2316481
Chromosome Location	chr3:56199963-56199964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1078309	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1078310	1.00[ASW][hapmap];0.88[CEU][hapmap];0.82[CHD][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11926826	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12485705	0.84[EUR][1000 genomes]
rs12486948	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12487839	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490280	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12491217	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12492055	0.97[EUR][1000 genomes]
rs12492253	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12635356	1.00[ASN][1000 genomes]
rs1352008	0.83[EUR][1000 genomes]
rs1352012	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1376984	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs1452214	0.97[ASN][1000 genomes]
rs1564907	0.87[ASN][1000 genomes]
rs1586314	0.96[ASN][1000 genomes]
rs1601451	0.96[ASN][1000 genomes]
rs17056646	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17288728	0.86[EUR][1000 genomes]
rs17732598	0.97[EUR][1000 genomes]
rs1825560	0.96[ASN][1000 genomes]
rs2167617	0.88[EUR][1000 genomes]
rs2316477	0.94[ASN][1000 genomes]
rs2316478	0.94[ASN][1000 genomes]
rs2316480	0.97[ASN][1000 genomes]
rs2316482	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35431468	0.97[EUR][1000 genomes]
rs35995295	0.83[EUR][1000 genomes]
rs4974120	0.97[EUR][1000 genomes]
rs4974121	0.97[EUR][1000 genomes]
rs4974123	0.97[EUR][1000 genomes]
rs4974130	0.88[EUR][1000 genomes]
rs4974170	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974171	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974175	0.90[JPT][hapmap]
rs4974176	0.97[EUR][1000 genomes]
rs4974179	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4974180	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4974196	0.83[EUR][1000 genomes]
rs55849756	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs56004380	0.88[EUR][1000 genomes]
rs58413645	0.88[EUR][1000 genomes]
rs59079055	0.97[EUR][1000 genomes]
rs60383545	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60384923	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61689518	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6445768	1.00[ASN][1000 genomes]
rs6445770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6763791	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6764295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6780051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6782034	0.97[EUR][1000 genomes]
rs6783356	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6786058	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6787104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6788949	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6789409	0.88[EUR][1000 genomes]
rs6801342	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6803165	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804221	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6810099	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309946	0.86[EUR][1000 genomes]
rs724929	0.82[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap]
rs72870171	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72870196	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73834604	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs755321	0.88[CEU][hapmap];0.82[CHD][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7613726	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7636352	0.97[ASN][1000 genomes]
rs7644153	0.96[ASN][1000 genomes]
rs7644257	0.97[ASN][1000 genomes]
rs7650293	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs965961	0.99[ASN][1000 genomes]
rs977313	0.97[EUR][1000 genomes]
rs9877547	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522496	chr3:56197528-56206591	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56192400-56204200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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