Variant report

Variant	rs4974196
Chromosome Location	chr3:56357553-56357554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1078309	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1078310	0.87[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11926826	0.85[EUR][1000 genomes]
rs12486948	0.85[EUR][1000 genomes]
rs12487839	0.83[EUR][1000 genomes]
rs12490280	0.85[EUR][1000 genomes]
rs12491217	0.85[EUR][1000 genomes]
rs12492055	0.85[EUR][1000 genomes]
rs12492253	0.85[EUR][1000 genomes]
rs12494857	0.94[EUR][1000 genomes]
rs12496048	0.87[CEU][hapmap];0.90[CHB][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs1352012	0.83[EUR][1000 genomes]
rs1452213	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17056646	0.85[EUR][1000 genomes]
rs17288728	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17732598	0.85[EUR][1000 genomes]
rs2167617	0.94[EUR][1000 genomes]
rs2316481	0.83[EUR][1000 genomes]
rs2316482	0.83[EUR][1000 genomes]
rs35431468	0.85[EUR][1000 genomes]
rs35995295	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974120	0.85[EUR][1000 genomes]
rs4974121	0.85[EUR][1000 genomes]
rs4974123	0.85[EUR][1000 genomes]
rs4974130	0.94[EUR][1000 genomes]
rs4974170	0.83[EUR][1000 genomes]
rs4974171	0.83[EUR][1000 genomes]
rs4974173	0.83[EUR][1000 genomes]
rs4974176	0.85[EUR][1000 genomes]
rs4974179	0.85[EUR][1000 genomes]
rs4974180	0.85[EUR][1000 genomes]
rs55849756	0.85[EUR][1000 genomes]
rs56004380	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58413645	0.94[EUR][1000 genomes]
rs59079055	0.85[EUR][1000 genomes]
rs60383545	0.85[EUR][1000 genomes]
rs60384923	0.85[EUR][1000 genomes]
rs61689518	0.83[EUR][1000 genomes]
rs6763791	0.83[EUR][1000 genomes]
rs6764295	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs6780051	0.83[EUR][1000 genomes]
rs6782034	0.85[EUR][1000 genomes]
rs6783356	0.85[EUR][1000 genomes]
rs6786058	0.85[EUR][1000 genomes]
rs6788949	0.83[EUR][1000 genomes]
rs6789409	0.94[EUR][1000 genomes]
rs6801342	0.83[EUR][1000 genomes]
rs6803165	0.85[EUR][1000 genomes]
rs6804221	0.85[EUR][1000 genomes]
rs6810099	0.83[EUR][1000 genomes]
rs71309946	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72870171	0.83[EUR][1000 genomes]
rs72870196	0.83[EUR][1000 genomes]
rs73834604	0.85[EUR][1000 genomes]
rs755321	0.87[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs7613726	0.85[EUR][1000 genomes]
rs7650293	0.85[EUR][1000 genomes]
rs977313	0.85[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56349200-56358000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56355000-56358800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:56355200-56357600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:56355200-56357800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:56355200-56358200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:56355600-56359800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:56356200-56357600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:56356200-56357800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:56356600-56357600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:56356600-56357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:56356800-56357800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:56356800-56358800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:56356800-56358800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:56356800-56359000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:56357000-56358400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:56357200-56358600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:56357200-56358800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:56357200-56359000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:56357200-56359000	Enhancers	Fetal Heart	heart
20	chr3:56357400-56358200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:56357400-56358600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr3:56357400-56358600	Enhancers	HSMMtube	muscle
23	chr3:56357400-56358800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:56357400-56358800	Enhancers	Ovary	ovary
25	chr3:56357400-56358800	Enhancers	Right Atrium	heart
26	chr3:56357400-56358800	Enhancers	NH-A	brain
27	chr3:56357400-56358800	Enhancers	NHDF-Ad	bronchial
28	chr3:56357400-56359000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr3:56357400-56359000	Enhancers	HUVEC	blood vessel
30	chr3:56357400-56359200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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