Variant report

Variant	rs12496048
Chromosome Location	chr3:56414387-56414388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56413540..56415679-chr3:56589466..56592282,2	K562	blood:

Variant related genes	Relation type
ENSG00000180376	Chromatin interaction

rs_ID	r²[population]
rs1078309	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs1078310	0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs11926826	0.83[EUR][1000 genomes]
rs12486948	0.83[EUR][1000 genomes]
rs12490280	0.83[EUR][1000 genomes]
rs12492055	0.83[EUR][1000 genomes]
rs12492253	0.83[EUR][1000 genomes]
rs12494857	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13100994	1.00[AFR][1000 genomes]
rs17056646	0.83[EUR][1000 genomes]
rs17288728	0.88[EUR][1000 genomes]
rs17732598	0.83[EUR][1000 genomes]
rs2167617	0.91[EUR][1000 genomes]
rs35431468	0.83[EUR][1000 genomes]
rs35995295	0.91[EUR][1000 genomes]
rs4974120	0.83[EUR][1000 genomes]
rs4974121	0.83[EUR][1000 genomes]
rs4974123	0.83[EUR][1000 genomes]
rs4974130	0.91[EUR][1000 genomes]
rs4974173	0.80[EUR][1000 genomes]
rs4974176	0.83[EUR][1000 genomes]
rs4974179	0.83[EUR][1000 genomes]
rs4974180	0.83[EUR][1000 genomes]
rs4974196	0.91[EUR][1000 genomes]
rs55849756	0.83[EUR][1000 genomes]
rs56004380	0.91[EUR][1000 genomes]
rs58413645	0.91[EUR][1000 genomes]
rs59079055	0.83[EUR][1000 genomes]
rs60383545	0.83[EUR][1000 genomes]
rs61689518	0.80[EUR][1000 genomes]
rs6763791	0.80[EUR][1000 genomes]
rs6782034	0.83[EUR][1000 genomes]
rs6783356	0.83[EUR][1000 genomes]
rs6786058	0.83[EUR][1000 genomes]
rs6788949	0.80[EUR][1000 genomes]
rs6789409	0.91[EUR][1000 genomes]
rs6801342	0.80[EUR][1000 genomes]
rs6803165	0.83[EUR][1000 genomes]
rs71309946	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71309948	1.00[AFR][1000 genomes]
rs72870196	0.80[EUR][1000 genomes]
rs73834604	0.83[EUR][1000 genomes]
rs755321	0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs7613726	0.83[EUR][1000 genomes]
rs7650293	0.83[EUR][1000 genomes]
rs977313	0.83[EUR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs12496048	GNAQ	trans	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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