Variant report

Variant	rs4974175
Chromosome Location	chr3:56219210-56219211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10433621	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12486927	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1376984	0.86[CEU][hapmap];0.90[JPT][hapmap]
rs1452217	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1452218	0.81[AMR][1000 genomes]
rs1901554	0.81[AMR][1000 genomes]
rs4425224	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4974173	0.90[JPT][hapmap]
rs6445770	0.90[JPT][hapmap]
rs6764295	0.90[JPT][hapmap]
rs6779122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787104	0.84[CEU][hapmap];0.90[JPT][hapmap]
rs724929	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7626017	0.81[ASN][1000 genomes]
rs7628255	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56211800-56222400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:56219000-56219600	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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