Variant report

Variant	rs1452217
Chromosome Location	chr3:56257202-56257203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10433621	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1078309	0.88[CHB][hapmap];0.81[AMR][1000 genomes]
rs1078310	0.90[CHB][hapmap]
rs11926826	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12486948	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12490280	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12492253	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12635356	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1376984	0.92[CEU][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1452214	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1452218	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1564907	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1586314	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1601451	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1825560	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1901554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2316477	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2316478	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2316480	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35431468	0.88[ASN][1000 genomes]
rs4425224	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974173	0.90[JPT][hapmap]
rs4974175	0.81[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs59079055	0.82[ASN][1000 genomes]
rs6445768	0.97[EUR][1000 genomes]
rs6445770	0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6764295	0.90[JPT][hapmap]
rs6779122	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6787104	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs724929	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs755321	0.90[CHB][hapmap];0.81[AMR][1000 genomes]
rs7636352	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7644153	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7644257	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7650293	0.81[ASN][1000 genomes]
rs965961	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs977313	0.88[ASN][1000 genomes]
rs9877547	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56252000-56272200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56254800-56258200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:56254800-56280600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:56256400-56257600	Enhancers	Brain Hippocampus Middle	brain
5	chr3:56256400-56258200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:56257000-56257400	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:56257000-56257400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:56257000-56257600	Enhancers	Brain Substantia Nigra	brain

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