Variant report

Variant	rs7628255
Chromosome Location	chr3:56223384-56223385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1078310	0.86[CHD][hapmap];0.82[MEX][hapmap]
rs12486927	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1376984	0.86[CEU][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap]
rs4974173	0.90[JPT][hapmap]
rs4974175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445770	0.90[JPT][hapmap]
rs6764295	0.90[JPT][hapmap];0.82[MEX][hapmap]
rs6779122	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787104	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs724929	1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs755321	0.86[CHD][hapmap];0.91[MEX][hapmap]
rs7626017	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7628255	C3orf51	cis	cerebellum	SCAN
rs7628255	MUSTN1	cis	cerebellum	SCAN
rs7628255	ERC2	cis	cerebellum	SCAN
rs7628255	ARF4	cis	parietal	SCAN
rs7628255	C3orf63	cis	cerebellum	SCAN
rs7628255	FLNB	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56219600-56224200	Weak transcription	Fetal Intestine Large	intestine
2	chr3:56222800-56224800	Enhancers	Fetal Muscle Leg	muscle
3	chr3:56223000-56223400	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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