Variant report

Variant	rs12491124
Chromosome Location	chr3:195621707-195621708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:195621378-195622104	HepG2	liver:	n/a	chr3:195622017-195622030 chr3:195621986-195621996 chr3:195622031-195622041 chr3:195621647-195621659 chr3:195621645-195621664 chr3:195621649-195621659 chr3:195622031-195622043 chr3:195622029-195622042
2	CTCF	chr3:195621524-195621791	GM13976	blood:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
3	CTCF	chr3:195621600-195621750	K562	blood:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
4	CTCF	chr3:195621600-195621750	NHLF	lung:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
5	CTCF	chr3:195621509-195621817	GM12892	blood:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
6	CTCF	chr3:195621580-195621730	GM12868	blood:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
7	POLR2A	chr3:195621490-195623421	Raji	blood:	n/a	n/a
8	BCLAF1	chr3:195621475-195622126	GM12878	blood:	n/a	chr3:195622024-195622037
9	STAT5A	chr3:195621593-195622124	GM12878	blood:	n/a	chr3:195622036-195622048 chr3:195621665-195621677
10	CTCF	chr3:195621580-195621730	GM12878	blood:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
11	CTCF	chr3:195621515-195622181	GM19238	blood:	n/a	chr3:195621648-195621664 chr3:195622028-195622041 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
12	CTCF	chr3:195621600-195621750	HCPEpiC	choroid plexus:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
13	CTCF	chr3:195621541-195621842	Lung_OC	lung:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
14	TCF12	chr3:195621386-195623895	ECC-1	luminal epithelium:	n/a	chr3:195622462-195622469 chr3:195622762-195622772
15	CTCF	chr3:195621560-195621710	HCT-116	colon:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
16	RAD21	chr3:195621413-195621846	HepG2	liver:	n/a	chr3:195621647-195621659 chr3:195621645-195621664 chr3:195621649-195621659
17	CTCF	chr3:195621560-195621710	HCM	heart:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
18	SMC3	chr3:195621083-195624613	SK-N-SH	brain:	n/a	chr3:195622552-195622562 chr3:195622031-195622041 chr3:195623099-195623106 chr3:195621649-195621663 chr3:195621274-195621284 chr3:195622712-195622722
19	CTCF	chr3:195621408-195622368	MCF-7	breast:	n/a	chr3:195621648-195621664 chr3:195622028-195622041 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
20	SMC3	chr3:195621476-195622147	GM12878	blood:	n/a	chr3:195622031-195622041 chr3:195621649-195621663
21	CTCF	chr3:195621527-195621751	SK-N-SH_RA	brain:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
22	FOXA1	chr3:195621491-195622169	HepG2	liver:	n/a	chr3:195621735-195621750
23	CTCF	chr3:195621535-195621803	LNCaP	prostate:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
24	RAD21	chr3:195621447-195622119	IMR90	lung:	n/a	chr3:195622017-195622030 chr3:195621986-195621996 chr3:195622031-195622041 chr3:195621647-195621659 chr3:195621645-195621664 chr3:195621649-195621659 chr3:195622031-195622043 chr3:195622029-195622042
25	FOXP2	chr3:195621462-195621735	SK-N-MC	brain:	n/a	n/a
26	CTCF	chr3:195621600-195621750	HEEpiC	esophagus:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
27	CTCF	chr3:195621600-195621750	GM12868	blood:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
28	SPI1	chr3:195621567-195621786	K562	blood:	n/a	chr3:195621665-195621678 chr3:195621668-195621675
29	CTCF	chr3:195621580-195621730	HUVEC	blood vessel:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
30	STAT5A	chr3:195621421-195622673	GM12878	blood:	n/a	chr3:195622444-195622456 chr3:195622036-195622048 chr3:195621665-195621677
31	CTCF	chr3:195621466-195621803	ECC-1	luminal epithelium:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
32	CTCF	chr3:195621538-195621799	GM20000	blood:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
33	CTCF	chr3:195621600-195621750	GM12865	blood:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
34	CTCF	chr3:195621600-195621750	AG04449	skin:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
35	MAZ	chr3:195621508-195622187	HepG2	liver:	n/a	n/a
36	SPI1	chr3:195621414-195621989	HL-60	blood:	n/a	chr3:195621665-195621678 chr3:195621668-195621675
37	CTCF	chr3:195621580-195621730	GM12870	blood:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
38	MAX	chr3:195621480-195621759	K562	blood:	n/a	n/a
39	CTCF	chr3:195621425-195622207	HepG2	liver:	n/a	chr3:195621648-195621664 chr3:195622028-195622041 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
40	RAD21	chr3:195621432-195622077	H1-hESC	embryonic stem cell:	n/a	chr3:195622017-195622030 chr3:195621986-195621996 chr3:195622031-195622041 chr3:195621647-195621659 chr3:195621645-195621664 chr3:195621649-195621659 chr3:195622031-195622043 chr3:195622029-195622042
41	CTCF	chr3:195621600-195621750	HepG2	liver:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
42	CTCF	chr3:195621600-195621750	HRPEpiC	eye:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
43	CTCF	chr3:195621533-195621825	HUVEC	blood vessel:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
44	CTCF	chr3:195621524-195621822	LNCaP	prostate:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
45	CTCF	chr3:195621560-195621710	HFF-Myc	foreskin:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
46	CTCF	chr3:195621600-195621750	HVMF	connective:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
47	POLR2A	chr3:195621444-195623669	HL-60	blood:	n/a	n/a
48	STAT1	chr3:195621579-195622400	GM12878	blood:	n/a	chr3:195622036-195622048 chr3:195621665-195621677
49	EP300	chr3:195621394-195622158	T-47D	breast:	n/a	chr3:195621736-195621746 chr3:195622025-195622041
50	CTCF	chr3:195621533-195621807	Medullo	brain:	n/a	chr3:195621648-195621664 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662

No.	Distal block	Cell Line	Cell type
1	chr3:195612044..195614541-chr3:195621690..195623267,2	MCF-7	breast:
2	chr3:195620885..195622532-chr3:195635337..195638039,2	K562	blood:
3	chr3:195615420..195617360-chr3:195618716..195622167,3	MCF-7	breast:
4	chr3:195585410..195592750-chr3:195621468..195626254,9	MCF-7	breast:
5	chr3:195620748..195623057-chr3:195678515..195681386,2	K562	blood:
6	chr3:195585687..195591910-chr3:195617865..195621709,8	K562	blood:
7	chr3:195583683..195587914-chr3:195619199..195624309,6	K562	blood:

Variant related genes	Relation type
TNK2	TF binding region
ENSG00000260261	Chromatin interaction
ENSG00000223783	Chromatin interaction
ENSG00000061938	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10881557	0.94[ASN][1000 genomes]
rs10881558	0.96[ASN][1000 genomes]
rs11717090	0.96[ASN][1000 genomes]
rs11719343	0.95[ASN][1000 genomes]
rs11720557	0.81[ASN][1000 genomes]
rs12491213	0.99[ASN][1000 genomes]
rs12494665	0.96[ASN][1000 genomes]
rs12631116	1.00[LWK][hapmap]
rs12632436	1.00[EUR][1000 genomes]
rs61058949	0.96[ASN][1000 genomes]
rs6785122	0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs6791922	0.96[ASN][1000 genomes]
rs73087352	0.96[ASN][1000 genomes]
rs73087356	0.92[ASN][1000 genomes]
rs7340710	0.95[ASN][1000 genomes]
rs7355913	0.96[ASN][1000 genomes]
rs7634904	0.96[ASN][1000 genomes]
rs9866046	0.96[ASN][1000 genomes]
rs9880526	0.90[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014826	chr3:194834615-195631793	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
2	nsv536876	chr3:194834615-195631793	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv1001387	chr3:195186128-195661538	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
5	nsv428102	chr3:195201080-195829426	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv428430	chr3:195201080-195829426	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv1006217	chr3:195312401-195643229	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
8	nsv536882	chr3:195312401-195643229	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
9	esv1813494	chr3:195325408-195628669	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
10	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
11	nsv1006165	chr3:195383130-195777211	Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
12	nsv471621	chr3:195417664-195795474	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv878157	chr3:195421983-195628636	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
14	esv2751988	chr3:195433543-195651349	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
15	esv2756651	chr3:195433543-195696720	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
16	nsv432528	chr3:195433543-195696720	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
17	esv2754016	chr3:195433543-195753766	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
18	nsv822410	chr3:195438740-195725565	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
19	nsv1003062	chr3:195473784-195630700	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
20	nsv878162	chr3:195475989-195641908	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
21	nsv878163	chr3:195477791-195641908	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
22	nsv997893	chr3:195501392-195642192	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
23	nsv1005193	chr3:195526571-195709662	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
24	nsv878166	chr3:195550366-195628636	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
25	nsv878167	chr3:195550366-195637439	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
26	nsv878168	chr3:195553259-195644332	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
27	nsv1002591	chr3:195564086-195643229	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
28	nsv530397	chr3:195565159-195740416	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
29	nsv878169	chr3:195571024-195628636	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
30	nsv593056	chr3:195571024-195656731	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
31	nsv1007235	chr3:195582468-195651911	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
32	nsv1002629	chr3:195582468-195769275	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
33	esv1811906	chr3:195598137-195637469	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
34	esv1803133	chr3:195606770-195623789	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases
35	nsv1014602	chr3:195606770-195661538	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
36	nsv829827	chr3:195608866-195760829	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195589400-195621800	Weak transcription	Small Intestine	intestine
2	chr3:195612800-195621800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:195617600-195624400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr3:195619000-195622000	Enhancers	Gastric	stomach
5	chr3:195619200-195621800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr3:195619400-195621800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:195619400-195622600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:195619600-195621800	Weak transcription	Aorta	Aorta
9	chr3:195620000-195621800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:195620000-195621800	Enhancers	Right Atrium	heart
11	chr3:195620400-195621800	Weak transcription	Ovary	ovary
12	chr3:195620600-195622000	Enhancers	Spleen	Spleen
13	chr3:195620800-195621800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:195620800-195621800	Weak transcription	Left Ventricle	heart
15	chr3:195620800-195622200	Flanking Active TSS	HMEC	breast
16	chr3:195620800-195622400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:195620800-195622400	Flanking Active TSS	Fetal Thymus	thymus
18	chr3:195620800-195624600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:195621000-195621800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:195621000-195621800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:195621000-195623000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:195621200-195621800	Active TSS	NHLF	lung
23	chr3:195621200-195622000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr3:195621200-195622200	Flanking Active TSS	GM12878-XiMat	blood
25	chr3:195621200-195622600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr3:195621200-195623200	Active TSS	Brain Angular Gyrus	brain
27	chr3:195621200-195623600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr3:195621200-195623600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:195621200-195624600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:195621400-195621800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:195621400-195621800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:195621400-195621800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:195621400-195621800	Enhancers	Esophagus	oesophagus
34	chr3:195621400-195622000	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr3:195621400-195622000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr3:195621400-195622000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr3:195621400-195622000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:195621400-195622000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr3:195621400-195622000	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr3:195621400-195622200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr3:195621400-195622200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr3:195621400-195622200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:195621400-195622200	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr3:195621400-195622200	Flanking Active TSS	Brain Germinal Matrix	brain
45	chr3:195621400-195622200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
46	chr3:195621400-195622200	Flanking Active TSS	Fetal Intestine Large	intestine
47	chr3:195621400-195622200	Flanking Active TSS	Fetal Intestine Small	intestine
48	chr3:195621400-195622200	Flanking Active TSS	Fetal Stomach	stomach
49	chr3:195621400-195622400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr3:195621400-195622400	Flanking Active TSS	Dnd41	blood

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