Variant report

Variant	rs12491213
Chromosome Location	chr3:195621982-195621983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:195621378-195622104	HepG2	liver:	n/a	chr3:195622017-195622030 chr3:195621986-195621996 chr3:195622031-195622041 chr3:195621647-195621659 chr3:195621645-195621664 chr3:195621649-195621659 chr3:195622031-195622043 chr3:195622029-195622042
2	CTCF	chr3:195621894-195622133	MCF-7	breast:	n/a	chr3:195622028-195622041
3	POLR2A	chr3:195621490-195623421	Raji	blood:	n/a	n/a
4	BCLAF1	chr3:195621475-195622126	GM12878	blood:	n/a	chr3:195622024-195622037
5	STAT5A	chr3:195621593-195622124	GM12878	blood:	n/a	chr3:195622036-195622048 chr3:195621665-195621677
6	CTCF	chr3:195621893-195622148	A549	lung:	n/a	chr3:195622028-195622041
7	CTCF	chr3:195621515-195622181	GM19238	blood:	n/a	chr3:195621648-195621664 chr3:195622028-195622041 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
8	POLR2A	chr3:195621907-195623373	GM18951	blood:	n/a	n/a
9	CTCF	chr3:195621960-195622110	AG04449	skin:	n/a	chr3:195622028-195622041
10	TCF12	chr3:195621386-195623895	ECC-1	luminal epithelium:	n/a	chr3:195622462-195622469 chr3:195622762-195622772
11	SMC3	chr3:195621083-195624613	SK-N-SH	brain:	n/a	chr3:195622552-195622562 chr3:195622031-195622041 chr3:195623099-195623106 chr3:195621649-195621663 chr3:195621274-195621284 chr3:195622712-195622722
12	CTCF	chr3:195621408-195622368	MCF-7	breast:	n/a	chr3:195621648-195621664 chr3:195622028-195622041 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
13	SMC3	chr3:195621476-195622147	GM12878	blood:	n/a	chr3:195622031-195622041 chr3:195621649-195621663
14	CTCF	chr3:195621940-195622090	SAEC	small airway:	n/a	chr3:195622028-195622041
15	CTCF	chr3:195621940-195622090	A549	lung:	n/a	chr3:195622028-195622041
16	FOXA1	chr3:195621491-195622169	HepG2	liver:	n/a	chr3:195621735-195621750
17	RAD21	chr3:195621447-195622119	IMR90	lung:	n/a	chr3:195622017-195622030 chr3:195621986-195621996 chr3:195622031-195622041 chr3:195621647-195621659 chr3:195621645-195621664 chr3:195621649-195621659 chr3:195622031-195622043 chr3:195622029-195622042
18	STAT5A	chr3:195621421-195622673	GM12878	blood:	n/a	chr3:195622444-195622456 chr3:195622036-195622048 chr3:195621665-195621677
19	CTCF	chr3:195621920-195622070	GM12872	blood:	n/a	chr3:195622028-195622041
20	MAX	chr3:195621906-195622103	K562	blood:	n/a	n/a
21	CTCF	chr3:195621960-195622110	HEK293	kidney:	n/a	chr3:195622028-195622041
22	MAZ	chr3:195621508-195622187	HepG2	liver:	n/a	n/a
23	SPI1	chr3:195621414-195621989	HL-60	blood:	n/a	chr3:195621665-195621678 chr3:195621668-195621675
24	POLR2A	chr3:195621876-195622507	GM12878	blood:	n/a	n/a
25	CTCF	chr3:195621425-195622207	HepG2	liver:	n/a	chr3:195621648-195621664 chr3:195622028-195622041 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
26	ZBTB7A	chr3:195621792-195623090	K562	blood:	n/a	chr3:195622355-195622366 chr3:195622757-195622768
27	TEAD4	chr3:195621715-195622025	HepG2	liver:	n/a	n/a
28	RAD21	chr3:195621432-195622077	H1-hESC	embryonic stem cell:	n/a	chr3:195622017-195622030 chr3:195621986-195621996 chr3:195622031-195622041 chr3:195621647-195621659 chr3:195621645-195621664 chr3:195621649-195621659 chr3:195622031-195622043 chr3:195622029-195622042
29	CTCF	chr3:195621940-195622090	GM12865	blood:	n/a	chr3:195622028-195622041
30	CTCF	chr3:195621980-195622130	AG09309	skin:	n/a	chr3:195622028-195622041
31	RAD21	chr3:195621853-195622167	HepG2	liver:	n/a	chr3:195622017-195622030 chr3:195621986-195621996 chr3:195622031-195622041 chr3:195622031-195622043 chr3:195622029-195622042
32	CTCF	chr3:195621835-195622203	GM12892	blood:	n/a	chr3:195622028-195622041
33	CTCF	chr3:195621940-195622090	SK-N-SH_RA	brain:	n/a	chr3:195622028-195622041
34	POLR2A	chr3:195621444-195623669	HL-60	blood:	n/a	n/a
35	CTCF	chr3:195621940-195622090	HBMEC	blood vessel:	n/a	chr3:195622028-195622041
36	CTCF	chr3:195621940-195622090	HMEC	breast:	n/a	chr3:195622028-195622041
37	STAT1	chr3:195621579-195622400	GM12878	blood:	n/a	chr3:195622036-195622048 chr3:195621665-195621677
38	CREB1	chr3:195621780-195622442	A549	lung:	n/a	n/a
39	HMGN3	chr3:195621873-195623072	K562	blood:	n/a	n/a
40	EP300	chr3:195621394-195622158	T-47D	breast:	n/a	chr3:195621736-195621746 chr3:195622025-195622041
41	POLR2A	chr3:195621498-195623680	Hela-S3	cervix:	n/a	n/a
42	BRCA1	chr3:195621523-195622017	Hela-S3	cervix:	n/a	n/a
43	CTCF	chr3:195621940-195622090	HCPEpiC	choroid plexus:	n/a	chr3:195622028-195622041
44	CTCF	chr3:195621874-195622156	A549	lung:	n/a	chr3:195622028-195622041
45	RFX5	chr3:195621471-195622193	Hela-S3	cervix:	n/a	n/a
46	CTCF	chr3:195621864-195622322	GM12891	blood:	n/a	chr3:195622028-195622041
47	RCOR1	chr3:195621594-195622198	GM12878	blood:	n/a	n/a
48	CTCF	chr3:195621948-195622088	Kidney_OC	kidney:	n/a	chr3:195622028-195622041
49	CTCF	chr3:195621436-195622230	IMR90	lung:	n/a	chr3:195621648-195621664 chr3:195622028-195622041 chr3:195621647-195621665 chr3:195621642-195621663 chr3:195621649-195621662
50	ZBTB7A	chr3:195621365-195623344	ECC-1	luminal epithelium:	n/a	chr3:195622355-195622366 chr3:195622757-195622768

No.	Distal block	Cell Line	Cell type
1	chr3:195612044..195614541-chr3:195621690..195623267,2	MCF-7	breast:
2	chr3:195620885..195622532-chr3:195635337..195638039,2	K562	blood:
3	chr3:195615420..195617360-chr3:195618716..195622167,3	MCF-7	breast:
4	chr3:195585410..195592750-chr3:195621468..195626254,9	MCF-7	breast:
5	chr3:195620748..195623057-chr3:195678515..195681386,2	K562	blood:
6	chr15:40255571..40256473-chr3:195621820..195622320,2	MCF-7	breast:
7	chr3:195583683..195587914-chr3:195619199..195624309,6	K562	blood:
8	chr3:195600801..195603776-chr3:195621809..195623311,2	MCF-7	breast:

Variant related genes	Relation type
TNK2	TF binding region
ENSG00000223783	Chromatin interaction
ENSG00000061938	Chromatin interaction
ENSG00000260261	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10881557	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881558	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11717090	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11719343	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11720557	0.82[ASN][1000 genomes]
rs12491124	0.99[ASN][1000 genomes]
rs12494665	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61058949	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6785122	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6791922	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087352	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087356	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7340710	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7355913	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7634904	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9866046	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9880526	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014826	chr3:194834615-195631793	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
2	nsv536876	chr3:194834615-195631793	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv1001387	chr3:195186128-195661538	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
5	nsv428102	chr3:195201080-195829426	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv428430	chr3:195201080-195829426	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv1006217	chr3:195312401-195643229	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
8	nsv536882	chr3:195312401-195643229	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
9	esv1813494	chr3:195325408-195628669	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
10	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
11	nsv1006165	chr3:195383130-195777211	Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
12	nsv471621	chr3:195417664-195795474	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv878157	chr3:195421983-195628636	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
14	esv2751988	chr3:195433543-195651349	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
15	esv2756651	chr3:195433543-195696720	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
16	nsv432528	chr3:195433543-195696720	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
17	esv2754016	chr3:195433543-195753766	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
18	nsv822410	chr3:195438740-195725565	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
19	nsv1003062	chr3:195473784-195630700	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
20	nsv878162	chr3:195475989-195641908	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
21	nsv878163	chr3:195477791-195641908	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
22	nsv997893	chr3:195501392-195642192	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
23	nsv1005193	chr3:195526571-195709662	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
24	nsv878166	chr3:195550366-195628636	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
25	nsv878167	chr3:195550366-195637439	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
26	nsv878168	chr3:195553259-195644332	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
27	nsv1002591	chr3:195564086-195643229	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
28	nsv530397	chr3:195565159-195740416	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
29	nsv878169	chr3:195571024-195628636	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
30	nsv593056	chr3:195571024-195656731	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
31	nsv1007235	chr3:195582468-195651911	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
32	nsv1002629	chr3:195582468-195769275	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
33	esv1811906	chr3:195598137-195637469	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
34	esv1803133	chr3:195606770-195623789	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases
35	nsv1014602	chr3:195606770-195661538	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
36	nsv829827	chr3:195608866-195760829	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195617600-195624400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr3:195619000-195622000	Enhancers	Gastric	stomach
3	chr3:195619400-195622600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:195620600-195622000	Enhancers	Spleen	Spleen
5	chr3:195620800-195622200	Flanking Active TSS	HMEC	breast
6	chr3:195620800-195622400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:195620800-195622400	Flanking Active TSS	Fetal Thymus	thymus
8	chr3:195620800-195624600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:195621000-195623000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:195621200-195622000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr3:195621200-195622200	Flanking Active TSS	GM12878-XiMat	blood
12	chr3:195621200-195622600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr3:195621200-195623200	Active TSS	Brain Angular Gyrus	brain
14	chr3:195621200-195623600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr3:195621200-195623600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:195621200-195624600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:195621400-195622000	Flanking Active TSS	Primary B cells from peripheral blood	blood
18	chr3:195621400-195622000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr3:195621400-195622000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:195621400-195622000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:195621400-195622000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr3:195621400-195622000	Flanking Active TSS	Rectal Smooth Muscle	rectum
23	chr3:195621400-195622200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr3:195621400-195622200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr3:195621400-195622200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:195621400-195622200	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr3:195621400-195622200	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr3:195621400-195622200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
29	chr3:195621400-195622200	Flanking Active TSS	Fetal Intestine Large	intestine
30	chr3:195621400-195622200	Flanking Active TSS	Fetal Intestine Small	intestine
31	chr3:195621400-195622200	Flanking Active TSS	Fetal Stomach	stomach
32	chr3:195621400-195622400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr3:195621400-195622400	Flanking Active TSS	Dnd41	blood
34	chr3:195621400-195622600	Flanking Active TSS	Placenta	Placenta
35	chr3:195621400-195622600	Flanking Active TSS	Osteobl	bone
36	chr3:195621400-195623000	Active TSS	Psoas Muscle	Psoas
37	chr3:195621400-195623200	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr3:195621400-195623200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:195621400-195623600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:195621400-195623800	Flanking Active TSS	Fetal Muscle Leg	muscle
41	chr3:195621400-195624200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:195621400-195624400	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr3:195621600-195622000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr3:195621600-195622000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr3:195621600-195622000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:195621600-195622000	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr3:195621600-195622000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:195621600-195622000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr3:195621600-195622000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr3:195621600-195622000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

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