Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1011374	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs11921372	0.92[CEU][hapmap]
rs12487415	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12487721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12491939	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs12495863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449006	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs16830350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1967363	0.92[CEU][hapmap]
rs2365835	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs2886482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4680509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441260	1.00[CEU][hapmap]
rs6441261	1.00[CEU][hapmap]
rs73166274	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73166276	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73166277	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7629746	1.00[CEU][hapmap]
rs878382	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs895876	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs895877	0.92[CEU][hapmap]
rs9834663	0.84[AMR][1000 genomes]
rs9880297	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159134200-159137200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:159134600-159135000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:159134600-159135000	Enhancers	Fetal Stomach	stomach
4	chr3:159134600-159136000	Enhancers	Osteobl	bone
5	chr3:159134600-159136600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:159134600-159137200	Enhancers	HSMM	muscle
7	chr3:159134800-159135800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:159134800-159137200	Enhancers	HSMMtube	muscle

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