Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159147245..159149720-chr3:159151129..159153409,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1011374	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs11921372	0.92[CEU][hapmap]
rs12487415	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12487721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12491939	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs12492096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12495863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449006	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs16830350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1967363	0.92[CEU][hapmap]
rs2365835	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs4680509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441260	1.00[CEU][hapmap]
rs6441261	1.00[CEU][hapmap]
rs73166274	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73166276	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73166277	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7629746	1.00[CEU][hapmap]
rs878382	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs895876	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs895877	0.92[CEU][hapmap]
rs9834663	0.82[AMR][1000 genomes]
rs9880297	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159149000-159149200	Enhancers	Fetal Brain Male	brain

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