Variant report

Variant	rs1449006
Chromosome Location	chr3:159095337-159095338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1011374	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11921372	0.92[CEU][hapmap]
rs12487415	0.85[AMR][1000 genomes]
rs12487721	1.00[CEU][hapmap]
rs12491939	1.00[CEU][hapmap]
rs12492096	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs12495863	1.00[CEU][hapmap]
rs1375409	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449000	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1449013	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16830350	1.00[CEU][hapmap]
rs1967363	0.92[CEU][hapmap]
rs2365835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886482	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs4679856	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4680509	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs6441256	0.82[ASN][1000 genomes]
rs6441260	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs6441261	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs73166274	0.82[AMR][1000 genomes]
rs73166276	0.85[AMR][1000 genomes]
rs73166277	0.85[AMR][1000 genomes]
rs7621541	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs7629746	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs7632141	0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs7643870	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs878382	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs895876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs895877	0.92[CEU][hapmap]
rs9834663	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9880297	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159095000-159096200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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