Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011374	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs13434321	0.86[CEU][hapmap]
rs1375409	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs1448999	0.86[CEU][hapmap]
rs1449004	0.95[CEU][hapmap]
rs1449006	0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1449013	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs1489922	0.82[CEU][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs1515627	0.91[CEU][hapmap]
rs2220521	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs2365835	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2621302	0.87[CEU][hapmap]
rs4086062	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4440163	0.83[YRI][hapmap]
rs4679856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441256	0.80[EUR][1000 genomes]
rs6441260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6441261	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6782775	0.96[CEU][hapmap]
rs7629746	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7632141	0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7643870	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs878382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs895876	0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs9290039	0.83[YRI][hapmap]
rs9290040	0.91[CEU][hapmap]
rs9834663	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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