Variant report

Variant	rs9290039
Chromosome Location	chr3:159106064-159106065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1109313	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1122205	0.82[YRI][hapmap]
rs11921343	0.86[CEU][hapmap]
rs12485627	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1349165	0.86[MEX][hapmap];0.82[YRI][hapmap]
rs1349166	0.86[MEX][hapmap];0.82[YRI][hapmap]
rs1449019	0.86[MEX][hapmap];0.82[YRI][hapmap]
rs1489919	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1562669	0.82[YRI][hapmap]
rs17798211	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1868415	0.85[YRI][hapmap]
rs2365821	0.82[YRI][hapmap]
rs4440163	1.00[ASW][hapmap];0.93[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs4679856	0.83[YRI][hapmap]
rs6441254	0.82[YRI][hapmap]
rs6780514	0.86[CEU][hapmap]
rs6790232	0.86[CHB][hapmap]
rs6810169	0.86[MEX][hapmap];0.82[YRI][hapmap]
rs7611870	0.82[YRI][hapmap]
rs7617239	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7621541	0.83[YRI][hapmap]
rs7629577	0.82[YRI][hapmap]
rs7629583	0.82[YRI][hapmap]
rs7640445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7643500	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7643870	0.83[YRI][hapmap]
rs9283611	0.82[YRI][hapmap]
rs9681445	0.82[YRI][hapmap]
rs9809459	0.82[YRI][hapmap]
rs9825664	0.81[YRI][hapmap]
rs9832614	0.85[CEU][hapmap];0.89[AMR][1000 genomes]
rs9855118	0.82[YRI][hapmap]
rs9865361	0.86[CEU][hapmap]
rs9871574	0.86[CEU][hapmap]
rs9874504	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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