Variant report

Variant	rs9865361
Chromosome Location	chr3:159129218-159129219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1122205	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs11921343	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs1349165	0.93[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs1349166	0.93[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap]
rs1449018	0.93[CEU][hapmap];0.85[JPT][hapmap]
rs1449019	0.93[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap]
rs1449025	0.93[CEU][hapmap];0.91[JPT][hapmap]
rs1530726	0.82[EUR][1000 genomes]
rs1562669	0.93[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs1823311	0.86[CEU][hapmap]
rs1868415	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs2365820	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs2365821	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs35886259	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4440163	0.93[CEU][hapmap]
rs6441254	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs6771767	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6777541	0.86[CEU][hapmap]
rs6780514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs6807305	0.93[CEU][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs6810169	0.93[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap]
rs720397	0.85[CEU][hapmap]
rs7611870	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs7629577	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs7629583	0.93[CEU][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs7630467	0.91[CEU][hapmap]
rs7640445	0.86[CEU][hapmap]
rs7651493	0.82[EUR][1000 genomes]
rs9283611	0.93[CEU][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs9290036	0.93[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9290039	0.86[CEU][hapmap]
rs9290041	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9290042	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9681445	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs9809459	0.93[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs9823822	0.93[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs9825664	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs9832614	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9834337	0.93[CEU][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes]
rs9855118	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs9867432	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs9871574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9873091	0.93[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9874504	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs9874862	0.93[CEU][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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