Variant report

Variant	rs1823311
Chromosome Location	chr3:159035921-159035922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10936173	0.81[CHB][hapmap]
rs1122205	0.93[CEU][hapmap]
rs11921343	0.86[CEU][hapmap]
rs11924990	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1349165	0.93[CEU][hapmap]
rs1349166	0.93[CEU][hapmap]
rs1449018	0.93[CEU][hapmap]
rs1449019	0.93[CEU][hapmap]
rs1449025	0.93[CEU][hapmap]
rs1562669	0.93[CEU][hapmap]
rs1868414	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2017685	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2122147	0.85[ASN][1000 genomes]
rs2365490	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2365820	0.93[CEU][hapmap]
rs2365821	0.92[CEU][hapmap]
rs6441253	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6441254	0.93[CEU][hapmap]
rs6777541	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs6780514	0.85[CEU][hapmap]
rs6781221	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6807305	0.93[CEU][hapmap]
rs6810169	0.93[CEU][hapmap]
rs720397	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7611870	0.93[CEU][hapmap]
rs7629577	0.93[CEU][hapmap]
rs7629583	0.93[CEU][hapmap]
rs7630467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7639623	0.85[ASN][1000 genomes]
rs9283610	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9283611	0.93[CEU][hapmap]
rs9290036	0.93[CEU][hapmap]
rs9681445	0.93[CEU][hapmap]
rs9809459	0.93[CEU][hapmap]
rs9820047	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9821641	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs9823822	0.93[CEU][hapmap]
rs9825664	0.93[CEU][hapmap]
rs9827242	0.86[ASN][1000 genomes]
rs9827400	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9831067	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9832614	0.85[CEU][hapmap]
rs9834328	1.00[CHB][hapmap]
rs9834337	0.93[CEU][hapmap]
rs9838646	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs9839112	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs9852196	0.85[ASN][1000 genomes]
rs9855118	0.93[CEU][hapmap]
rs9856166	0.81[CHB][hapmap]
rs9862769	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9865361	0.86[CEU][hapmap]
rs9867432	0.92[CEU][hapmap]
rs9871574	0.85[CEU][hapmap]
rs9873091	0.93[CEU][hapmap]
rs9874504	0.85[CEU][hapmap]
rs9874862	0.93[CEU][hapmap]
rs9880642	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links