Variant report

Variant	rs9834328
Chromosome Location	chr3:158951100-158951101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10470473	0.81[JPT][hapmap]
rs10513537	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs10936173	0.81[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap]
rs10936175	1.00[JPT][hapmap]
rs10936176	1.00[JPT][hapmap]
rs11715082	0.90[JPT][hapmap]
rs11924990	1.00[CHB][hapmap]
rs13326945	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs1449017	0.88[CEU][hapmap]
rs17727250	0.81[JPT][hapmap]
rs1823311	1.00[CHB][hapmap]
rs1868414	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2122147	0.83[ASN][1000 genomes]
rs2365483	0.81[JPT][hapmap]
rs2365490	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6441253	1.00[CHB][hapmap]
rs6777541	1.00[CHB][hapmap]
rs6781221	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs6791853	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs720397	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7630467	1.00[CHB][hapmap]
rs7639608	0.92[ASW][hapmap];0.88[CEU][hapmap]
rs7639623	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9283610	1.00[CHB][hapmap]
rs9820047	1.00[CHB][hapmap]
rs9821641	1.00[CHB][hapmap]
rs9823142	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827400	1.00[CHB][hapmap]
rs9829189	1.00[ASN][1000 genomes]
rs9831067	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs9838646	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs9839112	1.00[CHB][hapmap]
rs9852196	0.83[ASN][1000 genomes]
rs9853995	0.88[CEU][hapmap]
rs9856166	0.81[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs9862769	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs9880642	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv491927	chr3:158692653-158952780	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9834328	ARL14	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158949200-158952000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:158951000-158952400	Enhancers	Osteobl	bone

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