Variant report

Variant	rs6441253
Chromosome Location	chr3:158999329-158999330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158998052..159000120-chr3:159030298..159031893,2	K562	blood:
2	chr3:158991788..158993700-chr3:158997368..159000280,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10936173	0.81[CHB][hapmap]
rs10936175	1.00[YRI][hapmap]
rs10936176	1.00[YRI][hapmap]
rs1122205	0.81[CEU][hapmap]
rs11924990	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1349165	0.81[CEU][hapmap]
rs1349166	0.81[CEU][hapmap]
rs1449018	0.81[CEU][hapmap]
rs1449019	0.81[CEU][hapmap]
rs1449021	0.87[AMR][1000 genomes]
rs1449025	0.81[CEU][hapmap]
rs1562669	0.81[CEU][hapmap]
rs1823311	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1868414	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2122147	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2365490	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs2365820	0.87[CEU][hapmap]
rs6441254	0.81[CEU][hapmap]
rs6777541	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6781221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791853	1.00[YRI][hapmap]
rs6807305	0.81[CEU][hapmap]
rs6810169	0.81[CEU][hapmap]
rs720397	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7611870	0.81[CEU][hapmap]
rs7629577	0.81[CEU][hapmap]
rs7629583	0.81[CEU][hapmap]
rs7630467	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7639623	0.88[ASN][1000 genomes]
rs9283610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9283611	0.81[CEU][hapmap]
rs9290036	0.81[CEU][hapmap]
rs9681445	0.81[CEU][hapmap]
rs9809459	0.81[CEU][hapmap]
rs9820047	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9821641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9823822	0.81[CEU][hapmap]
rs9825664	0.81[CEU][hapmap]
rs9827242	0.84[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9827400	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9829189	0.87[AMR][1000 genomes]
rs9831067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834328	1.00[CHB][hapmap]
rs9834337	0.81[CEU][hapmap]
rs9838646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs9839112	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9852196	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9855118	0.81[CEU][hapmap]
rs9856166	0.81[CHB][hapmap]
rs9862769	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9867432	0.81[CEU][hapmap]
rs9873091	0.81[CEU][hapmap]
rs9874862	0.81[CEU][hapmap]
rs9880642	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158999000-158999400	Enhancers	Fetal Brain Female	brain

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