Variant report

Variant	rs7643870
Chromosome Location	chr3:159106591-159106592
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13434321	0.91[CEU][hapmap]
rs1375409	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1448999	0.91[CEU][hapmap]
rs1449004	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs1449006	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1449013	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1489922	0.86[CEU][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1515627	0.86[CEU][hapmap]
rs2220521	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2365835	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2621302	0.91[CEU][hapmap]
rs4086062	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4440163	0.83[YRI][hapmap]
rs4679856	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441256	0.84[EUR][1000 genomes]
rs6441260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6441261	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6782775	0.91[CEU][hapmap]
rs7621541	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7629746	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7632141	0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs878382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs895876	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9290039	0.83[YRI][hapmap]
rs9290040	0.86[CEU][hapmap]
rs9834663	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links