Variant report
| Variant | rs2621302 |
|---|---|
| Chromosome Location | chr3:159051265-159051266 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:159045650..159047974-chr3:159049343..159051372,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11921372 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13434321 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1375409 | 0.95[CEU][hapmap] |
| rs1448999 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1449000 | 0.96[ASN][1000 genomes] |
| rs1449004 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1449013 | 0.95[CEU][hapmap] |
| rs1489922 | 0.86[CEU][hapmap] |
| rs1515627 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1967363 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2220521 | 0.86[CEU][hapmap] |
| rs4086062 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4679856 | 0.86[CEU][hapmap] |
| rs6441256 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6782775 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap] |
| rs7621541 | 0.87[CEU][hapmap] |
| rs7632141 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7643870 | 0.91[CEU][hapmap] |
| rs895877 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs9290040 | 0.86[CEU][hapmap] |
| rs9880297 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530059 | chr3:158332590-159147549 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv470971 | chr3:158590928-159158217 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
