Variant report

Variant	rs12493359
Chromosome Location	chr3:51082893-51082894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12485331	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12485754	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12487496	0.89[EUR][1000 genomes]
rs12490026	0.89[EUR][1000 genomes]
rs12490502	0.89[EUR][1000 genomes]
rs12491206	0.89[EUR][1000 genomes]
rs12491836	0.89[EUR][1000 genomes]
rs12492615	0.89[EUR][1000 genomes]
rs12492690	0.89[EUR][1000 genomes]
rs12492850	0.89[EUR][1000 genomes]
rs12494214	0.89[EUR][1000 genomes]
rs12496621	0.89[EUR][1000 genomes]
rs2127654	0.89[EUR][1000 genomes]
rs3762711	0.89[EUR][1000 genomes]
rs4073739	0.89[EUR][1000 genomes]
rs4078296	0.89[EUR][1000 genomes]
rs4130473	0.89[EUR][1000 genomes]
rs4323036	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4346580	0.89[EUR][1000 genomes]
rs4688697	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4927961	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57406588	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58720544	1.00[EUR][1000 genomes]
rs59682667	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59834534	0.89[EUR][1000 genomes]
rs60461297	0.89[EUR][1000 genomes]
rs60882641	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61627377	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72937265	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72939228	0.89[EUR][1000 genomes]
rs72941919	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72943130	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72943137	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72943166	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72948197	0.89[EUR][1000 genomes]
rs72948200	0.89[EUR][1000 genomes]
rs72953143	0.89[EUR][1000 genomes]
rs72953162	0.89[EUR][1000 genomes]
rs72953175	0.89[EUR][1000 genomes]
rs7372342	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7427615	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51082200-51083000	Enhancers	HSMM	muscle
2	chr3:51082600-51083000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:51082600-51083200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links