Variant report

Variant	rs72943130
Chromosome Location	chr3:51065917-51065918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12485331	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12485754	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12487496	0.89[EUR][1000 genomes]
rs12490026	0.89[EUR][1000 genomes]
rs12490502	0.89[EUR][1000 genomes]
rs12491206	0.89[EUR][1000 genomes]
rs12491836	0.89[EUR][1000 genomes]
rs12492615	0.89[EUR][1000 genomes]
rs12492690	0.89[EUR][1000 genomes]
rs12492850	0.89[EUR][1000 genomes]
rs12493359	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12494214	0.89[EUR][1000 genomes]
rs12496621	0.89[EUR][1000 genomes]
rs2127654	0.89[EUR][1000 genomes]
rs3762711	0.89[EUR][1000 genomes]
rs4073739	0.89[EUR][1000 genomes]
rs4078296	0.89[EUR][1000 genomes]
rs4130473	0.89[EUR][1000 genomes]
rs4323036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4346580	0.89[EUR][1000 genomes]
rs4688697	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4927961	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57406588	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58720544	1.00[EUR][1000 genomes]
rs59682667	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59834534	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59957657	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60461297	0.89[EUR][1000 genomes]
rs60882641	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61627377	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72937265	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72939228	0.89[EUR][1000 genomes]
rs72941919	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72943137	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72943166	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72948197	0.89[EUR][1000 genomes]
rs72948200	0.89[EUR][1000 genomes]
rs72953143	0.89[EUR][1000 genomes]
rs72953162	0.89[EUR][1000 genomes]
rs72953175	0.89[EUR][1000 genomes]
rs7372342	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7427615	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51063200-51066800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:51065200-51066400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:51065400-51066200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:51065600-51066600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:51065600-51066600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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