Variant report

Variant	rs4323036
Chromosome Location	chr3:51069747-51069748
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11130280	0.84[CHD][hapmap]
rs11917538	0.82[CHD][hapmap]
rs12485331	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12485754	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12487496	0.89[EUR][1000 genomes]
rs12488700	0.93[JPT][hapmap]
rs12488831	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12488948	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs12490026	0.89[EUR][1000 genomes]
rs12490502	0.89[EUR][1000 genomes]
rs12491206	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs12491836	0.89[EUR][1000 genomes]
rs12492615	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs12492690	0.89[EUR][1000 genomes]
rs12492850	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12493359	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494214	0.89[EUR][1000 genomes]
rs12496621	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs13061003	0.82[CHD][hapmap]
rs13080170	0.82[CHD][hapmap]
rs1480364	0.81[CHD][hapmap]
rs2125368	1.00[CEU][hapmap]
rs2127654	0.89[EUR][1000 genomes]
rs2883809	0.81[CHD][hapmap]
rs3762711	0.89[EUR][1000 genomes]
rs4073739	0.89[EUR][1000 genomes]
rs4078296	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs4130473	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4346580	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs4356848	0.82[CHD][hapmap]
rs4367100	0.81[CHD][hapmap]
rs4443210	0.82[CHD][hapmap]
rs4560329	0.84[CHD][hapmap]
rs4688697	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4927961	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57406588	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58720544	1.00[EUR][1000 genomes]
rs59682667	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59834534	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59957657	0.81[AMR][1000 genomes]
rs60461297	0.89[EUR][1000 genomes]
rs60882641	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61627377	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6445549	0.81[CHD][hapmap]
rs6446239	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6772197	0.82[CHD][hapmap]
rs6784455	0.81[CHD][hapmap]
rs6787805	0.83[CHD][hapmap]
rs6795573	0.82[CHD][hapmap]
rs72937265	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72939228	0.89[EUR][1000 genomes]
rs72941919	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72943130	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72943137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72943166	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72948197	0.89[EUR][1000 genomes]
rs72948200	0.89[EUR][1000 genomes]
rs72953143	0.89[EUR][1000 genomes]
rs72953162	0.89[EUR][1000 genomes]
rs72953175	0.89[EUR][1000 genomes]
rs7372342	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7427526	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7427615	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes]
rs7433217	0.81[CHD][hapmap]
rs7614482	0.82[CHD][hapmap]
rs7627266	0.82[CHD][hapmap]
rs7638082	0.82[CHD][hapmap]
rs9865532	0.82[CHD][hapmap]
rs9875961	0.81[CHD][hapmap]
rs995543	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51068000-51070800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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