Variant report

Variant	rs12493727
Chromosome Location	chr3:155581268-155581269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155569501..155576246-chr3:155578051..155582871,10	K562	blood:
2	chr3:155581025..155583122-chr3:155605137..155607755,2	K562	blood:
3	chr3:155568463..155575692-chr3:155576220..155581983,14	K562	blood:
4	chr3:155581032..155584920-chr3:155585125..155590498,11	MCF-7	breast:
5	chr3:155579576..155584964-chr3:155586056..155589559,5	MCF-7	breast:
6	chr3:155579889..155584960-chr3:155586303..155591182,11	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GMPS-1	chr3:155580439-155581520	XLOC_002888
2	lnc-GMPS-1	chr3:155580437-155581489	NONHSAT092846

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11928152	0.81[ASN][1000 genomes]
rs12496313	0.86[AMR][1000 genomes]
rs2270754	0.82[AMR][1000 genomes]
rs28651906	0.81[ASN][1000 genomes]
rs3804768	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61758982	1.00[EUR][1000 genomes]
rs6787767	0.81[ASN][1000 genomes]
rs6790836	0.81[ASN][1000 genomes]
rs7616485	0.81[ASN][1000 genomes]
rs9881705	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155575800-155587400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:155579600-155581400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:155579800-155581400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:155580400-155581600	Flanking Active TSS	K562	blood
5	chr3:155580600-155587400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:155580800-155587600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:155581000-155587600	Weak transcription	Fetal Thymus	thymus
8	chr3:155581200-155581600	Enhancers	HepG2	liver
9	chr3:155581200-155587200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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