Variant report

Variant	rs3804768
Chromosome Location	chr3:155570639-155570640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155570444..155573449-chr3:155586982..155591161,10	MCF-7	breast:
2	chr3:155521670..155525457-chr3:155569550..155572694,3	MCF-7	breast:
3	chr3:155522875..155525089-chr3:155569917..155571770,3	K562	blood:
4	chr3:155568718..155574348-chr3:155586235..155593210,15	K562	blood:
5	chr3:155569630..155574596-chr3:155585012..155589734,13	MCF-7	breast:
6	chr3:155522731..155527439-chr3:155568712..155573851,7	MCF-7	breast:
7	chr3:155531751..155534716-chr3:155568140..155570659,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163655	Chromatin interaction
ENSG00000174928	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1025341	0.82[ASN][1000 genomes]
rs1027535	0.82[ASN][1000 genomes]
rs1035990	0.82[ASN][1000 genomes]
rs10513483	0.84[ASN][1000 genomes]
rs11928152	0.88[ASN][1000 genomes]
rs12492572	0.81[ASN][1000 genomes]
rs12493448	0.84[ASN][1000 genomes]
rs12493727	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12496313	0.84[AMR][1000 genomes]
rs13315001	0.82[ASN][1000 genomes]
rs1991545	0.82[ASN][1000 genomes]
rs2270754	0.85[AMR][1000 genomes]
rs28651906	0.88[ASN][1000 genomes]
rs28693702	0.83[ASN][1000 genomes]
rs3087838	0.81[ASN][1000 genomes]
rs55890963	0.86[ASN][1000 genomes]
rs58069048	0.84[ASN][1000 genomes]
rs58087784	0.84[ASN][1000 genomes]
rs59849326	0.86[ASN][1000 genomes]
rs61758982	1.00[EUR][1000 genomes]
rs6441013	0.82[ASN][1000 genomes]
rs6441014	0.82[ASN][1000 genomes]
rs6441015	0.82[ASN][1000 genomes]
rs6775631	0.82[ASN][1000 genomes]
rs6780109	0.82[ASN][1000 genomes]
rs6787767	0.88[ASN][1000 genomes]
rs6790836	0.88[ASN][1000 genomes]
rs6797143	0.84[ASN][1000 genomes]
rs6800944	0.84[ASN][1000 genomes]
rs73003562	0.86[ASN][1000 genomes]
rs73007382	0.82[ASN][1000 genomes]
rs7616485	0.88[ASN][1000 genomes]
rs7617024	0.82[ASN][1000 genomes]
rs7618998	0.82[ASN][1000 genomes]
rs7623386	0.84[ASN][1000 genomes]
rs9818344	0.82[ASN][1000 genomes]
rs9851800	0.82[ASN][1000 genomes]
rs9877641	0.84[ASN][1000 genomes]
rs9881705	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155568200-155573200	Active TSS	Pancreas	Pancrea
2	chr3:155568400-155571000	Enhancers	Primary B cells from peripheral blood	blood
3	chr3:155568600-155573200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:155569000-155570800	Flanking Active TSS	Fetal Brain Female	brain
5	chr3:155569000-155571000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:155569000-155571000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:155569000-155571200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:155569000-155571800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:155569400-155570800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr3:155569400-155570800	Flanking Active TSS	Psoas Muscle	Psoas
11	chr3:155569400-155570800	Flanking Active TSS	HUVEC	blood vessel
12	chr3:155569400-155571000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:155569400-155571000	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr3:155569400-155571000	Flanking Active TSS	Hela-S3	cervix
15	chr3:155569400-155571200	Flanking Active TSS	Liver	Liver
16	chr3:155569400-155571400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr3:155569400-155571400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:155569400-155571400	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr3:155569400-155571400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr3:155569400-155571400	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr3:155569400-155571600	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr3:155569400-155571600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr3:155569400-155571600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr3:155569400-155572200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:155569400-155572600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:155569400-155573000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:155569400-155573200	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr3:155569400-155573200	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr3:155569400-155573200	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr3:155569600-155570800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:155569600-155570800	Flanking Active TSS	Fetal Brain Male	brain
32	chr3:155569600-155570800	Flanking Active TSS	NH-A	brain
33	chr3:155569600-155571000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:155569600-155571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:155569600-155571000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr3:155569600-155571000	Flanking Active TSS	Fetal Lung	lung
37	chr3:155569600-155571000	Flanking Active TSS	Thymus	Thymus
38	chr3:155569600-155571200	Flanking Active TSS	Brain Angular Gyrus	brain
39	chr3:155569600-155571200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
40	chr3:155569600-155571200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr3:155569600-155571200	Enhancers	Spleen	Spleen
42	chr3:155569600-155571200	Flanking Active TSS	Osteobl	bone
43	chr3:155569600-155571400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:155569600-155571400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr3:155569600-155571400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr3:155569600-155571400	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr3:155569600-155571400	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr3:155569600-155571400	Flanking Active TSS	Fetal Thymus	thymus
49	chr3:155569600-155571400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr3:155569600-155571400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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