Variant report

Variant	rs6775631
Chromosome Location	chr3:155544108-155544109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155542702..155544232-chr3:155546123..155548906,2	K562	blood:
2	chr3:155533251..155536091-chr3:155541941..155544518,2	K562	blood:
3	chr3:155542984..155546032-chr3:155588634..155590406,3	K562	blood:
4	chr3:155542604..155544846-chr3:155572519..155574378,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1025341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1027535	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1035990	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513483	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11928152	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12492572	0.94[ASN][1000 genomes]
rs12493448	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13315001	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991545	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2270754	0.81[ASN][1000 genomes]
rs28651906	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28693702	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3087838	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804768	0.82[ASN][1000 genomes]
rs4602344	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55890963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58069048	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58087784	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59849326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441013	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441015	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780109	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6787767	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6790836	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6797143	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6800944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6805683	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73003562	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73007382	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616485	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7617024	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618998	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7623386	0.98[ASN][1000 genomes]
rs9818344	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9881705	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155547000	Weak transcription	HSMMtube	muscle
2	chr3:155524400-155565800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:155524400-155567400	Weak transcription	Lung	lung
4	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:155524600-155544200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:155524600-155563400	Weak transcription	Brain Angular Gyrus	brain
7	chr3:155524600-155568000	Weak transcription	HUVEC	blood vessel
8	chr3:155527600-155544200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:155527600-155544400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:155530600-155569800	Weak transcription	Aorta	Aorta
11	chr3:155533200-155561800	Weak transcription	Gastric	stomach
12	chr3:155533400-155544400	Weak transcription	K562	blood
13	chr3:155533400-155565800	Weak transcription	HepG2	liver
14	chr3:155533400-155569400	Weak transcription	Brain Substantia Nigra	brain
15	chr3:155534000-155547200	Weak transcription	GM12878-XiMat	blood
16	chr3:155535000-155568000	Weak transcription	Right Ventricle	heart
17	chr3:155535200-155544400	Weak transcription	NH-A	brain
18	chr3:155535200-155546800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:155535200-155551200	Weak transcription	NHEK	skin
20	chr3:155535400-155568800	Weak transcription	Osteobl	bone
21	chr3:155535600-155568000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:155536000-155546400	Weak transcription	Thymus	Thymus
23	chr3:155536200-155546800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:155536800-155568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:155537000-155547000	Weak transcription	Dnd41	blood
26	chr3:155537200-155565600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:155537400-155546200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:155537400-155564000	Weak transcription	Fetal Brain Female	brain
29	chr3:155538600-155558800	Weak transcription	Pancreas	Pancrea
30	chr3:155539200-155544400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:155539200-155555400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:155539600-155544400	Weak transcription	Primary B cells from cord blood	blood
33	chr3:155540000-155569400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:155540200-155568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:155541000-155552000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr3:155541000-155568000	Weak transcription	Psoas Muscle	Psoas
37	chr3:155541200-155544200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:155541200-155544800	Weak transcription	Placenta	Placenta
39	chr3:155541200-155546600	Weak transcription	Fetal Intestine Large	intestine
40	chr3:155541200-155546800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:155541200-155547000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:155541200-155547000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:155541200-155547200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr3:155541200-155567400	Weak transcription	Ovary	ovary
45	chr3:155541400-155546000	Weak transcription	Fetal Thymus	thymus
46	chr3:155541400-155551200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:155541600-155546200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr3:155541600-155567800	Weak transcription	Colonic Mucosa	Colon
49	chr3:155541800-155544400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:155541800-155544400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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