Variant report

Variant	rs6790836
Chromosome Location	chr3:155565917-155565918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155563365..155564979-chr3:155565910..155569268,3	K562	blood:
2	chr3:155563365..155564970-chr3:155565910..155568625,2	K562	blood:
3	chr3:155564204..155569110-chr3:155569153..155573660,11	K562	blood:
4	chr3:155558812..155562150-chr3:155562255..155568620,8	K562	blood:
5	chr3:155565692..155567322-chr3:155574348..155576119,2	K562	blood:

Variant related genes	Relation type
ENSG00000169359	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1025341	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1027535	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1035990	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10513483	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11928152	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12492572	0.85[ASN][1000 genomes]
rs12493448	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12493727	0.81[ASN][1000 genomes]
rs13315001	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1991545	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28651906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28693702	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3087838	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3762716	1.00[CEU][hapmap]
rs3804768	0.88[ASN][1000 genomes]
rs4602344	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55890963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58069048	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58087784	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59849326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441013	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441015	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6775631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6780109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6787767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797143	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6800944	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6805683	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73003562	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73007382	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7616485	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617024	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7618998	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7623386	0.89[ASN][1000 genomes]
rs9818344	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9851800	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9877641	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9881705	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155567400	Weak transcription	Lung	lung
2	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:155524600-155568000	Weak transcription	HUVEC	blood vessel
4	chr3:155530600-155569800	Weak transcription	Aorta	Aorta
5	chr3:155533400-155569400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:155535000-155568000	Weak transcription	Right Ventricle	heart
7	chr3:155535400-155568800	Weak transcription	Osteobl	bone
8	chr3:155535600-155568000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:155536800-155568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:155540000-155569400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:155540200-155568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:155541000-155568000	Weak transcription	Psoas Muscle	Psoas
13	chr3:155541200-155567400	Weak transcription	Ovary	ovary
14	chr3:155541600-155567800	Weak transcription	Colonic Mucosa	Colon
15	chr3:155541800-155566000	Weak transcription	Small Intestine	intestine
16	chr3:155542800-155569600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:155543000-155566000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:155543000-155569400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:155543000-155569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:155543000-155569400	Weak transcription	NHLF	lung
21	chr3:155543000-155570200	Weak transcription	Esophagus	oesophagus
22	chr3:155543200-155569400	Weak transcription	A549	lung
23	chr3:155544200-155569000	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:155545600-155567200	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:155545600-155568000	Weak transcription	Fetal Kidney	kidney
26	chr3:155547600-155567200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:155547800-155567000	Weak transcription	Hela-S3	cervix
28	chr3:155547800-155567200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:155547800-155568000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:155547800-155569000	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:155547800-155569400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:155547800-155569600	Weak transcription	HSMMtube	muscle
33	chr3:155551800-155566200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:155551800-155567200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:155551800-155568200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:155551800-155568200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr3:155551800-155569600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:155552000-155568000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:155552000-155569400	Weak transcription	HSMM	muscle
40	chr3:155552000-155569600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr3:155552600-155567400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr3:155552800-155569000	Weak transcription	Primary B cells from cord blood	blood
43	chr3:155553400-155568000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr3:155553800-155568000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:155554000-155567400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:155554000-155568200	Weak transcription	NH-A	brain
47	chr3:155554800-155568000	Weak transcription	Fetal Lung	lung
48	chr3:155557600-155569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr3:155559000-155569000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr3:155559200-155568000	Weak transcription	Fetal Muscle Leg	muscle

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