Variant report
Variant | rs12494658 |
---|---|
Chromosome Location | chr3:85874476-85874477 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11708024 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs1448610 | 0.80[TSI][hapmap] |
rs17023296 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
rs17023388 | 1.00[CEU][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2325035 | 0.86[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap] |
rs4856604 | 0.86[ASW][hapmap];0.95[CEU][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | nsv877106 | chr3:85814620-86006210 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv877107 | chr3:85814620-86037162 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv877108 | chr3:85870363-86037162 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
Disease | PMID | Source |
---|---|---|
Temperament | 22832960 | GWAS catalog |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs12494658 | ODF3L2 | trans | parietal | SCAN |