Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11708024	0.91[JPT][hapmap];0.85[YRI][hapmap]
rs11708377	1.00[YRI][hapmap]
rs12486982	1.00[YRI][hapmap]
rs12491363	1.00[YRI][hapmap]
rs12492459	1.00[YRI][hapmap]
rs12494658	0.86[ASW][hapmap];0.95[CEU][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs13082138	0.85[YRI][hapmap]
rs13099482	0.82[YRI][hapmap]
rs1448609	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1448610	0.80[TSI][hapmap]
rs17023296	0.82[CEU][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs17023388	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2325006	1.00[YRI][hapmap]
rs2325035	1.00[ASW][hapmap];0.82[CEU][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap]
rs4368495	1.00[YRI][hapmap]
rs4600827	1.00[YRI][hapmap]
rs4688895	1.00[YRI][hapmap]
rs6549049	0.81[CHD][hapmap]
rs6787622	0.81[CHD][hapmap]
rs7623480	0.81[CHD][hapmap]
rs9879903	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4856604	ODF3L2	trans	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85839400-85840200	Enhancers	Brain Hippocampus Middle	brain
2	chr3:85839400-85840200	Enhancers	Brain Substantia Nigra	brain
3	chr3:85839800-85840200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:85839800-85840200	Enhancers	Aorta	Aorta
5	chr3:85839800-85840200	Enhancers	Brain Angular Gyrus	brain
6	chr3:85839800-85840600	Enhancers	Brain Inferior Temporal Lobe	brain

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