Variant report

Variant	rs2325035
Chromosome Location	chr3:85811233-85811234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11708023	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs11708024	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11708377	0.85[YRI][hapmap]
rs12494658	0.86[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap]
rs12497036	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs1448609	0.83[JPT][hapmap]
rs1448610	0.87[CEU][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs17023296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17023388	1.00[JPT][hapmap]
rs3158	0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs4600827	0.85[YRI][hapmap]
rs4856604	1.00[ASW][hapmap];0.82[CEU][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap]
rs55829275	0.92[EUR][1000 genomes]
rs56101762	0.91[EUR][1000 genomes]
rs62261700	0.92[EUR][1000 genomes]
rs9879903	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv460753	chr3:85789007-85820416	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv590911	chr3:85789007-85820416	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2325035	ODF3L2	trans	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85801200-85815000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85810400-85811400	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links