Variant report

Variant	rs12495001
Chromosome Location	chr3:100144690-100144691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100137308..100139601-chr3:100143622..100145390,3	K562	blood:
2	chr3:100120464..100122813-chr3:100141808..100145050,3	K562	blood:
3	chr3:100133383..100135770-chr3:100143466..100145263,2	K562	blood:
4	chr3:100119922..100121510-chr3:100141513..100144955,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154174	Chromatin interaction
ENSG00000206535	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10936180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1123578	0.81[ASN][1000 genomes]
rs1214381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1530283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs166747	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs277620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs277628	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs277629	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs277630	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs277633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs277634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs277635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs277638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs277642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs277644	0.82[ASN][1000 genomes]
rs3772692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3806615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs392066	1.00[CEU][hapmap]
rs413425	0.82[ASN][1000 genomes]
rs431069	0.81[ASN][1000 genomes]
rs432715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6780662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6791102	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6794955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7616634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7641630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100122600-100149200	Weak transcription	Left Ventricle	heart
2	chr3:100127600-100146200	Weak transcription	Ovary	ovary
3	chr3:100127600-100148200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:100130600-100162800	Weak transcription	Fetal Brain Male	brain
5	chr3:100132000-100148200	Weak transcription	Aorta	Aorta
6	chr3:100132200-100151600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:100132800-100157800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:100136000-100144800	Weak transcription	HepG2	liver
9	chr3:100140000-100148000	Weak transcription	Right Atrium	heart
10	chr3:100141000-100145200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:100142800-100145400	Enhancers	Fetal Intestine Large	intestine
12	chr3:100142800-100145800	Enhancers	Fetal Intestine Small	intestine
13	chr3:100143400-100144800	Enhancers	Liver	Liver
14	chr3:100143400-100148000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:100143600-100144800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:100143600-100145200	Enhancers	HMEC	breast
17	chr3:100143600-100145400	Enhancers	Hela-S3	cervix
18	chr3:100143800-100145200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:100143800-100145400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:100143800-100145400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:100144000-100145200	Enhancers	A549	lung
22	chr3:100144000-100147600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr3:100144000-100151800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:100144200-100145200	Flanking Active TSS	NHEK	skin
25	chr3:100144200-100145400	Enhancers	Pancreas	Pancrea
26	chr3:100144200-100146400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:100144200-100175600	Weak transcription	Psoas Muscle	Psoas
28	chr3:100144600-100145200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:100144600-100145400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:100144600-100145600	Enhancers	K562	blood
31	chr3:100144600-100148400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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