Variant report

Variant	rs1530283
Chromosome Location	chr3:100127241-100127242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100125929..100131101-chr3:100131208..100137515,9	MCF-7	breast:
2	chr3:100116341..100122043-chr3:100122556..100129449,8	MCF-7	breast:
3	chr3:100127093..100129855-chr3:100136435..100139051,2	K562	blood:
4	chr3:100125201..100127632-chr3:100128770..100131554,3	K562	blood:
5	chr3:100126754..100128460-chr3:100131723..100134239,2	K562	blood:
6	chr3:100124446..100128777-chr3:100130213..100134934,4	MCF-7	breast:
7	chr3:100124785..100128926-chr3:100132004..100134239,4	K562	blood:

Variant related genes	Relation type
ENSG00000206535	Chromatin interaction
ENSG00000154174	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10936180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1123578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1214380	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1214381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1228184	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12495001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs166747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs277620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs277622	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs277623	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs277626	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs277628	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs277629	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs277630	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs277633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs277634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs277635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs277638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs277642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs277644	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs277651	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs372438	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3772692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3806615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs392066	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs402870	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs413425	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs431069	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs432715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6780662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6791102	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6794955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7616634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100121800-100131000	Weak transcription	Psoas Muscle	Psoas
2	chr3:100122000-100143800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:100122400-100132400	Weak transcription	Primary T cells from cord blood	blood
4	chr3:100122600-100129800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:100122600-100132400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:100122600-100133600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:100122600-100149200	Weak transcription	Left Ventricle	heart
8	chr3:100122800-100129800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:100122800-100131600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:100123000-100129000	Weak transcription	NHLF	lung
11	chr3:100123000-100131600	Weak transcription	Fetal Heart	heart
12	chr3:100123000-100131600	Weak transcription	HSMM	muscle
13	chr3:100123000-100131800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:100123000-100132600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:100123000-100133600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:100123200-100130200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:100123200-100133600	Weak transcription	A549	lung
18	chr3:100123200-100135400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:100123400-100130200	Weak transcription	K562	blood
20	chr3:100123400-100132000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:100123400-100132000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:100123400-100132000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:100124200-100143600	Weak transcription	Hela-S3	cervix
24	chr3:100124400-100130200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:100125600-100128000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:100125800-100128000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:100126000-100127400	ZNF genes & repeats	Fetal Lung	lung
28	chr3:100126000-100127600	Genic enhancers	HepG2	liver
29	chr3:100126200-100127400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
30	chr3:100126200-100128200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
31	chr3:100126400-100127400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr3:100126400-100133200	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:100126400-100143200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:100126600-100131000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:100126600-100139800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:100126800-100127400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
37	chr3:100126800-100127800	ZNF genes & repeats	Fetal Brain Female	brain
38	chr3:100127000-100127400	Enhancers	H1 Cell Line	embryonic stem cell
39	chr3:100127000-100127400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:100127000-100127400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:100127000-100127400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
42	chr3:100127000-100127400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:100127000-100127400	ZNF genes & repeats	Aorta	Aorta
44	chr3:100127000-100127400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
45	chr3:100127000-100127400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
46	chr3:100127000-100127400	Genic enhancers	Gastric	stomach
47	chr3:100127000-100127400	Genic enhancers	Pancreas	Pancrea
48	chr3:100127000-100127600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:100127000-100127600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
50	chr3:100127000-100127600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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